PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.07G080300.1.p
Common NameGLYMA_07G080300, LOC100804760
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family TCP
Protein Properties Length: 336aa    MW: 35580.1 Da    PI: 10.0398
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.07G080300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP119.83.3e-37651662104
                  TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssgka 90 
                          + k+ +++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++ti WLl+ a+pai+++tgt++ +a ++  +++   +  + s +++
  Glyma.07G080300.1.p  65 PQKRASTKDRHTKVEGRGRRIRMPATCAARIFQLTRELGHKSDGETIRWLLEHAEPAIIAATGTGTVPAIAMsVNGT--LKIPTTSPSDQ 152
                          57999***********************************************************7777744421111..11111111112 PP

                  TCP  91 aksaakskksqksa 104
                          ++ +++++k++k++
  Glyma.07G080300.1.p 153 EPGDQPERKKRKRP 166
                          22222111111111 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.9E-3170173IPR005333Transcription factor, TCP
PROSITE profilePS5136927.14171125IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008361Biological Processregulation of cell size
GO:0048364Biological Processroot development
GO:1900056Biological Processnegative regulation of leaf senescence
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MADEASGDVD LRLGEPKAPK EEPETEEGSA IRVMPVAVHV PAGMSMSMSK ALAQAQAQAQ  60
AQAQPQKRAS TKDRHTKVEG RGRRIRMPAT CAARIFQLTR ELGHKSDGET IRWLLEHAEP  120
AIIAATGTGT VPAIAMSVNG TLKIPTTSPS DQEPGDQPER KKRKRPANSA YVDINDAAVS  180
ISTGLASSNN NNQNAATTTT MTIPQHTAIP LPQGMVPVWA IPSNAVVPAA GAFFVVPQTA  240
SFQHQPQFFT IARPISAFVS SLVTPVQPQP TSITSSSNAN ASSTAPSSKS AARATVMAPT  300
TTTATTTTTQ MLRDFSLEIY DKQELQFMSR ASSKH*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1158165ERKKRKRP
2159164RKKRKR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.44580.0cotyledon| root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in archespores, pollen mother cell, ovule primordia and megaspore mother cells. {ECO:0000269|PubMed:25527103}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00316DAPTransfer from AT2G45680Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.07G080300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2350480.0AC235048.1 Glycine max strain Williams 82 clone GM_WBb0045O22, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003529971.10.0transcription factor TCP9
RefseqXP_028239692.10.0transcription factor TCP9-like
SwissprotO646478e-94TCP9_ARATH; Transcription factor TCP9
TrEMBLA0A445JTY00.0A0A445JTY0_GLYSO; Transcription factor TCP9
TrEMBLK7L0D30.0K7L0D3_SOYBN; Uncharacterized protein
STRINGGLYMA07G08710.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21183086
Representative plantOGRP31781129
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45680.17e-73TCP family protein