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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.07G078600.1.p | ||||||||
Common Name | GLYMA_07G078600, LOC100799444 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | ERF | ||||||||
Protein Properties | Length: 334aa MW: 35881.4 Da PI: 8.2831 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 62.5 | 9e-20 | 35 | 85 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 ++ GVr+++ +grWvAeI+d s ++ r +lg+++t+eeAa+a+++a+++l+ge Glyma.07G078600.1.p 35 RFIGVRQRP-SGRWVAEIKDSS---QHVRLWLGTYDTPEEAARAYDEAARALRGE 85 578******.7*********42...35**************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 20.363 | 35 | 92 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.3E-28 | 35 | 92 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.2E-33 | 35 | 98 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 6.3E-15 | 35 | 85 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.36E-30 | 35 | 94 | No hit | No description |
PRINTS | PR00367 | 3.5E-7 | 36 | 47 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 6.21E-20 | 36 | 92 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 3.5E-7 | 58 | 74 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 334 aa Download sequence Send to blast |
MAGAEATKYA SSATSPTTTA ANNMATKSNK PTIRRFIGVR QRPSGRWVAE IKDSSQHVRL 60 WLGTYDTPEE AARAYDEAAR ALRGENARTN FAPVSQVILG QQQSGSNNNL STGSDIGKHG 120 LSFASLKAKL SKNLQNIMAR ASDHNNNNKS SKSRVSDHFT FASIFHRRSY QIPEGDTMKN 180 IDKVVQPSII VPPMEAGGVG DYNSSVANWE SASSVSDCSS EWVGFGNSKL GLESDGYEIG 240 EASVGDQGFL EQLMGWIETP DISDHQGEGS RSKRFKVSSS VLVPPTFTGS SYDCGSPFSG 300 YASPYNNGYA SPYNNGCASP CNGYASPYYN NKK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 7e-15 | 35 | 91 | 14 | 71 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.07G078600.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003529962.1 | 0.0 | ethylene-responsive transcription factor ABR1 | ||||
Refseq | XP_028240607.1 | 0.0 | ethylene-responsive transcription factor ABR1-like | ||||
TrEMBL | A0A445JTV9 | 0.0 | A0A445JTV9_GLYSO; Ethylene-responsive transcription factor ERN1 | ||||
TrEMBL | K7L0B7 | 0.0 | K7L0B7_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA07G08542.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8324 | 31 | 43 |
Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G19790.1 | 8e-16 | related to AP2 11 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.07G078600.1.p |
Entrez Gene | 100799444 |