PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.07G074300.1.p
Common NameGLYMA_07G074300, LOC102663223
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB_related
Protein Properties Length: 386aa    MW: 43241.1 Da    PI: 9.434
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.07G074300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding361.6e-112369147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                         rgrW++eE+ l++ + + +  g+W  Ia  + k+R++ q+ s+ qky
  Glyma.07G074300.1.p 23 RGRWSQEEHMLFLLGLEIYSRGDWINIATNVVKTRSPTQVASHAQKY 69
                         8*********************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129311.7912174IPR017884SANT domain
Gene3DG3DSA:1.10.10.601.8E-72268IPR009057Homeodomain-like
SuperFamilySSF466891.79E-132274IPR009057Homeodomain-like
SMARTSM007177.5E-82272IPR001005SANT/Myb domain
TIGRFAMsTIGR015572.2E-102373IPR006447Myb domain, plants
PfamPF002499.0E-92369IPR001005SANT/Myb domain
CDDcd001679.40E-72570No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
MSGVNNRSEL SPLDQGNKTL TRRGRWSQEE HMLFLLGLEI YSRGDWINIA TNVVKTRSPT  60
QVASHAQKYF YRQASNNTGK RRSIHDITIQ HPIPLLNFPA SPNTNLAMHH SFPHHINQQN  120
QGFSSNLPMH HLSVPYHFNH QTQVFCSNLA MQQFHGIPHS VPQHINQQNQ VGSSNLAMQE  180
LLGRHLYVPD HINHQNQAVS PNLAMQQLHG VQHSVPGHIN QQNQVSSPNL AMQQLHGVQH  240
SVPGHINQQN QVSSPNLAMQ QLHGVQHSVP DHTNQKNQVS SPNLAMQQLH GVQHSVPGHI  300
NQQNQVASPN LAMQQLHGVQ HSVPGHINQQ NQVYSPNLAM QQLHGVQHSV PDHINQQNQV  360
SSPNLAMQQL HGIHHSVPDH TNQQH*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.07G074300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006583330.10.0putative mediator of RNA polymerase II transcription subunit 12
TrEMBLK7L0880.0K7L088_SOYBN; Uncharacterized protein
STRINGGLYMA07G08081.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3088622
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58900.16e-23Homeodomain-like transcriptional regulator