PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.07G053900.2.p

Common Name

GLYMA_07G053900

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

Dof

Protein Properties

Length: 288aa MW: 31481.1 Da PI: 9.3266

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.07G053900.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	126	1.2e-39	20	80	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++++l+cprC+stntkfCyynnysl+qPryfCk+CrryWt+GG+lrnvPvGgg+rknkk+s Glyma.07G053900.2.p 20 PQEQLNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKKVS 80 6899******************************************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-26	19	76	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.5E-33	22	78	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.124	24	78	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	26	62	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 288 aa Download sequence Send to blast
MEGMAPNSCA RPVLEKKTRP QEQLNCPRCN STNTKFCYYN NYSLTQPRYF CKTCRRYWTE 60 GGSLRNVPVG GGSRKNKKVS VTASSSSSPK VPDLNPPINL SSVSAISSQN PKIMHGGQDL 120 NLAFPAMEKY HHGMPPYVEM QNSDTTTTHH HHQTSSSCSA PPASLSALEL LRSSMASRGL 180 NPYAPSSSLM PNSTNSNALY SSGFPMQEVK PSLNFSSADG MGNRSYDHHQ IQERGGGRLL 240 FPFGDVKQLS AAAGADQVEH NKEQQGNSTE VVQKLTIGHT WHRKGEY*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.27132	0.0	hypocotyl\| meristem\| root

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Turned off in siliques when they reached full maturation. Not expressed in developing or mature embryos.
Uniprot	TISSUE SPECIFICITY: Expressed in the phloem of the mother plant, including in roots, stem, leaves and flowers, but not present in the seed and embryo. In maturing siliques, found all through the funiculus connecting the placenta to the ovule, but not in the ovule.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor specifically involved in the maternal control of seed germination. Regulates transcription by binding to a 5'-AA[AG]G-3' consensus core sequence. May ensure the inactivity of a component that would be activated to trigger germination as a consequence of red light perception.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.07G053900.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	DQ857267	0.0	DQ857267.1 Glycine max Dof17 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028239369.1	0.0	dof zinc finger protein DOF2.5-like
Refseq	XP_028239370.1	0.0	dof zinc finger protein DOF2.5-like
Swissprot	Q43385	4e-60	DOF37_ARATH; Dof zinc finger protein DOF3.7
TrEMBL	A0A0R0J0D5	0.0	A0A0R0J0D5_SOYBN; Uncharacterized protein
STRING	GLYMA07G05950.1	0.0	(Glycine max)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G61850.4	4e-51	Dof family protein

Link Out ? help Back to Top
Phytozome	Glyma.07G053900.2.p