PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

HD-ZIP

Protein Properties

Length: 239aa MW: 27335.2 Da PI: 4.8623

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.07G052100.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	59.4	6e-19	32	83	5	56
SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++f++eq++ Le++Fe+++ + +++ +LA++lgL+ rqV +WFqN+Ra++k Glyma.07G052100.1.p 32 RRFSDEQIKSLETMFESESRLEPRKKLQLARELGLQPRQVAIWFQNKRARWK 83 58*************************************************9 PP
2	HD-ZIP_I/II	120	1.2e-38	31	121	3	93
HD-ZIP_I/II 3 krrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 rr+s+eq+k+LE++Fe+e++Lep++K +lareLglqprqva+WFqn+RAR+k+kqlE+dy L+++y++l+++ e+L+ke+++L +l+ Glyma.07G052100.1.p 31 TRRFSDEQIKSLETMFESESRLEPRKKLQLARELGLQPRQVAIWFQNKRARWKSKQLERDYGILQSNYNSLASRFEALKKENQTLLIQLQ 120 79***********************************************************************************99998 PP HD-ZIP_I/II 93 e 93 + Glyma.07G052100.1.p 121 K 121 6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.39E-18	14	87	IPR009057	Homeodomain-like
SMART	SM00389	4.5E-15	23	89	IPR001356	Homeobox domain
PROSITE profile	PS50071	17.508	25	85	IPR001356	Homeobox domain
CDD	cd00086	1.30E-14	32	86	No hit	No description
Gene3D	G3DSA:1.10.10.60	2.2E-19	32	92	IPR009057	Homeodomain-like
Pfam	PF00046	2.2E-16	32	83	IPR001356	Homeobox domain
PRINTS	PR00031	9.6E-6	56	65	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	60	83	IPR017970	Homeobox, conserved site
PRINTS	PR00031	9.6E-6	65	81	IPR000047	Helix-turn-helix motif
Pfam	PF02183	5.5E-17	85	127	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 239 aa Download sequence Send to blast
MEYTYSAGVE AETHTSSSTT PSRSKKRNNN TRRFSDEQIK SLETMFESES RLEPRKKLQL 60 ARELGLQPRQ VAIWFQNKRA RWKSKQLERD YGILQSNYNS LASRFEALKK ENQTLLIQLQ 120 KLNHLMQKPM EPGQRCTQVE AANSMDSESE NGGTMKCEAE GKPSPSMEIS EHLLGVLSDD 180 DTSIKVEDFG LEDEHGLLNF AKHVDGSLTS PEDWNAFESN DLLGQSTTDD YQWWDFWS*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.20579	0.0	leaf\| root\| stem

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Widely expressed. {ECO:0000269\|PubMed:16055682, ECO:0000269\|PubMed:8771791}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription activator that may act as growth regulators in response to water deficit. {ECO:0000269\|PubMed:15604708, ECO:0000269\|PubMed:8771791}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.07G052100.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By water deficit, by abscisic acid (ABA) and by salt stress. {ECO:0000269\|PubMed:16055682, ECO:0000269\|PubMed:8771791}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KT031175	0.0	KT031175.1 Glycine max clone HN_WYQ_3 homeodomain/HOMEOBOX transcription factor (Glyma07g05800.1) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001341790.1	1e-178	homeodomain/HOMEOBOX transcription factor
Refseq	XP_028239346.1	1e-178	homeobox-leucine zipper protein ATHB-12-like
Swissprot	P46897	6e-61	ATHB7_ARATH; Homeobox-leucine zipper protein ATHB-7
TrEMBL	A0A0K2CTA9	1e-177	A0A0K2CTA9_SOYBN; Homeodomain/HOMEOBOX transcription factor (Fragment)
TrEMBL	A0A445JSM9	1e-177	A0A445JSM9_GLYSO; Homeobox-leucine zipper protein ATHB-7
TrEMBL	I1KHS0	1e-177	I1KHS0_SOYBN; Uncharacterized protein
STRING	GLYMA07G05800.1	1e-178	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5635	34	52
Representative plant	OGRP129	16	189

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G61890.1	2e-60	homeobox 12

Link Out ? help Back to Top
Phytozome	Glyma.07G052100.1.p
Entrez Gene	100797862

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhou SF, et al. Membrane-associated transcription factor peptidase, site-2 protease, antagonizes ABA signaling in Arabidopsis. New Phytol., 2015. 208(1): p. 188-97 [PMID:25919792] Chai C, et al. Soybean transcription factor ORFeome associated with drought resistance: a valuable resource to accelerate research on abiotic stress resistance. BMC Genomics, 2015. 16: p. 596 [PMID:26268547]