PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

bHLH

Protein Properties

Length: 465aa MW: 51821.5 Da PI: 6.5147

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.07G051500.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	39	1.4e-12	286	331	4	54
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +h e+Er+RR+++N++f Lr ++P+ +++Ka+ L Av YI++L Glyma.07G051500.1.p 286 NHVEAERQRREKLNHRFYALRAVVPNV-----SRMDKASLLSDAVAYISEL 331 799*********************6.....4**************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF14215	2.0E-44	29	195	IPR025610	Transcription factor MYC/MYB N-terminal
PROSITE profile	PS50888	16.615	282	331	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.24E-16	283	343	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.05E-14	285	336	No hit	No description
Gene3D	G3DSA:4.10.280.10	2.1E-15	286	342	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	4.3E-10	286	331	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	7.7E-14	288	337	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 465 aa Download sequence Send to blast
MEDLIISPSS SSSLVSLPHE NPTPTPTLLQ KLQFLLQSQP DWWVYAIFWQ ASHDDNGNLY 60 LSFGEGHFQG TKETSPKSLT IPTKKFMRAP TNDTNNINDA EWFYVVSLTR TFAVNNNASS 120 SSSSLPGKSF ALGSVLWLNN MHELQFYNCE RSNEAQVHGI ETLICIPTQN GVVEMGSYDT 180 IKQNWNLVQH VKSLFITPPD PVPVEILDDH TISFADIGIV AGVQETKKRR INQTQTQKPP 240 RKNDNYVNSE HSDSDCPTLP TATTPTTSEP KKRGRKPILG RETPVNHVEA ERQRREKLNH 300 RFYALRAVVP NVSRMDKASL LSDAVAYISE LKAKIEYLES QQPRDSSKKV KTEMTDTLDN 360 HSTTTISTVV DQSGPEPRLG PSPLGLEVDV KIVGPDAMVR VQSENVNHPG ARLMGALRDL 420 EFQVHHASMS CVNDLMLQDV VVKLPNGMRS EEGLKSAILM RLDQ*

Sequence ? help Back to Top

Protein Sequence Length: 465 aa Download sequence Send to blast

MEDLIISPSS SSSLVSLPHE NPTPTPTLLQ KLQFLLQSQP DWWVYAIFWQ ASHDDNGNLY  60
LSFGEGHFQG TKETSPKSLT IPTKKFMRAP TNDTNNINDA EWFYVVSLTR TFAVNNNASS  120
SSSSLPGKSF ALGSVLWLNN MHELQFYNCE RSNEAQVHGI ETLICIPTQN GVVEMGSYDT  180
IKQNWNLVQH VKSLFITPPD PVPVEILDDH TISFADIGIV AGVQETKKRR INQTQTQKPP  240
RKNDNYVNSE HSDSDCPTLP TATTPTTSEP KKRGRKPILG RETPVNHVEA ERQRREKLNH  300
RFYALRAVVP NVSRMDKASL LSDAVAYISE LKAKIEYLES QQPRDSSKKV KTEMTDTLDN  360
HSTTTISTVV DQSGPEPRLG PSPLGLEVDV KIVGPDAMVR VQSENVNHPG ARLMGALRDL  420
EFQVHHASMS CVNDLMLQDV VVKLPNGMRS EEGLKSAILM RLDQ*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4rqw_A	3e-28	27	195	8	192	Transcription factor MYC3
4rqw_B	3e-28	27	195	8	192	Transcription factor MYC3
4rs9_A	3e-28	27	195	8	192	Transcription factor MYC3
4yz6_A	3e-28	27	195	8	192	Transcription factor MYC3
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.07G051500.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KT031109	0.0	KT031109.1 Glycine max clone HN_CCL_177 bHLH transcription factor (Glyma07g05740.1) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003528771.1	0.0	transcription factor MYC2
Refseq	XP_028239343.1	0.0	transcription factor MYC2-like
TrEMBL	A0A445JSL8	0.0	A0A445JSL8_GLYSO; Transcription factor bHLH14
TrEMBL	I1KHR7	0.0	I1KHR7_SOYBN; BHLH transcription factor
STRING	GLYMA07G05740.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF841	34	116
Representative plant	OGRP8004	7	17

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00870.1	3e-70	bHLH family protein

Link Out ? help Back to Top
Phytozome	Glyma.07G051500.1.p
Entrez Gene	100795733

Publications ? help Back to Top
Chai C, et al. Soybean transcription factor ORFeome associated with drought resistance: a valuable resource to accelerate research on abiotic stress resistance. BMC Genomics, 2015. 16: p. 596 [PMID:26268547]