PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.07G048200.1.p
Common NameGLYMA_07G048200
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family B3
Protein Properties Length: 501aa    MW: 56285.6 Da    PI: 7.1201
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.07G048200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B395.82.9e-30140234189
                          EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-. CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld. 85 
                          f+kv tpsdv+k++rlv+pk++ae++    ++ +e++  l +ed++g+ W+++++y+++s++yv+tkGW++Fvk+++L++gD+v F++  
  Glyma.07G048200.1.p 140 FDKVVTPSDVGKLNRLVIPKQHAEKYfpldSSANEKGLLLNFEDRNGKLWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDMVSFQRGv 229
                          89***************************966667889*************************************************543 PP

                          SS.SE CS
                   B3  86 gr.se 89 
                          g+  +
  Glyma.07G048200.1.p 230 GElYR 234
                          54444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.0E-40129231IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.19E-29136228IPR015300DNA-binding pseudobarrel domain
CDDcd100174.21E-26138227No hitNo description
SMARTSM010193.7E-21140241IPR003340B3 DNA binding domain
PROSITE profilePS5086314.001140240IPR003340B3 DNA binding domain
PfamPF023621.2E-27140243IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 501 aa     Download sequence    Send to blast
MELMQEVKGY SDGREEEEEE EEAAEEIITR EESSKSHNSS SGLGLLHQHQ EAAGSNFIIN  60
NNHHHHQHHH HHTTKQLDFM DLSLGSSKDE GNLQGSSSSV YAHHHHAASA SSSANGNNNN  120
SSSSNLQQQQ QQPAEKEHMF DKVVTPSDVG KLNRLVIPKQ HAEKYFPLDS SANEKGLLLN  180
FEDRNGKLWR FRYSYWNSSQ SYVMTKGWSR FVKEKKLDAG DMVSFQRGVG ELYRHRLYID  240
WWRRPDHHHH HHHGPDHSTT LFTPFLIPNQ PHHLMSIRWG ATGRLYSLPS PTPPRHHEHL  300
NYNNNAMYHP FHHHGAGSGI NATTHHYNNY HEMSSTTTSG SAGSVFYHRS TPPISMPLAD  360
HQTLNTRQQQ QQQQQQEGAG NVSLSPMIID SVPVAHHLHH QQHHGGKSSG PSSTSTSPST  420
AGKRLRLFGV NMECASSTSE DPKCFSLLSS SSMANSNSQP PLQLLREDTL SSSSARFGDQ  480
RGVGEPSMLF DLDPSLQYRQ *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A1e-621342452114B3 domain-containing transcription factor NGA1
5os9_B1e-621342452114B3 domain-containing transcription factor NGA1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.593000.0cotyledon| flower
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.07G048200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2352930.0AC235293.1 Glycine max strain Williams 82 clone GM_WBb0059D15, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003529866.20.0B3 domain-containing protein Os03g0120900
RefseqXP_006583192.10.0B3 domain-containing protein Os03g0120900
RefseqXP_028239294.10.0B3 domain-containing protein Os03g0120900-like
RefseqXP_028239295.10.0B3 domain-containing protein Os03g0120900-like
RefseqXP_028239296.10.0B3 domain-containing protein Os03g0120900-like
TrEMBLA0A0R0J5H30.0A0A0R0J5H3_SOYBN; Uncharacterized protein
STRINGGLYMA07G05381.30.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23383382
Representative plantOGRP36516108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46870.12e-64B3 family protein