PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.07G048000.2.p

Common Name

GLYMA_07G048000

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

NAC

Protein Properties

Length: 321aa MW: 36494.1 Da PI: 4.9506

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.07G048000.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	121.7	6.4e-38	6	138	3	128
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk.......kvkaeekewyfFskrdkkyatgkrknratksgyWka 85 +G+ F+Pt+eelv++yLk+ + g++ ++ +vi+ +d+++vePwd p +++ ++ +w+fFs+ d ky+++kr nr+tk g+Wk Glyma.07G048000.2.p 6 VGLGFRPTEEELVDFYLKHMLLGNDPRA-HVIPVIDLCDVEPWDVPVmlaksssTIRFGDPDWFFFSPVDFKYSRSKRFNRTTKCGFWKP 94 6999*******************998.99***********546655544444888************************* PP NAM 86 tgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 tg d+ev + +++l+g+kktLvfykgr ++g+k+ Wv+hey++ Glyma.07G048000.2.p 95 TGVDREVRTFeTNTLIGTKKTLVFYKGRVSRGVKSIWVIHEYHA 138 ***98757778*************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	43.309	4	156	IPR003441	NAC domain
SuperFamily	SSF101941	1.1E-42	6	156	IPR003441	NAC domain
Pfam	PF02365	1.5E-20	6	137	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 321 aa Download sequence Send to blast
MDDDIVGLGF RPTEEELVDF YLKHMLLGND PRAHVIPVID LCDVEPWDVP VMLAKSSSTI 60 RFGDPDWFFF SPVDFKYSRS KRFNRTTKCG FWKPTGVDRE VRTFETNTLI GTKKTLVFYK 120 GRVSRGVKSI WVIHEYHAVT FHESQRTFVL CRLMKKPGKT TEGGTDALIC DEGEPSRHMI 180 SVYGNQEKAE GIPSGSTCIG METILQATPQ AEKYFSPIHQ SQTGIEEEAS FSSYPFNNAY 240 FRNENNPMQT SFETTEEMQT SFEITEEVEF LNSILVDESF VIDKESMHVF VNSSTQSESL 300 SDTDAEVVSK LVKIRYPKSK *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-26	7	156	20	165	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-26	7	156	20	165	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-26	7	156	20	165	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-26	7	156	20	165	NO APICAL MERISTEM PROTEIN
3swm_A	2e-26	7	156	23	168	NAC domain-containing protein 19
3swm_B	2e-26	7	156	23	168	NAC domain-containing protein 19
3swm_C	2e-26	7	156	23	168	NAC domain-containing protein 19
3swm_D	2e-26	7	156	23	168	NAC domain-containing protein 19
3swp_A	2e-26	7	156	23	168	NAC domain-containing protein 19
3swp_B	2e-26	7	156	23	168	NAC domain-containing protein 19
3swp_C	2e-26	7	156	23	168	NAC domain-containing protein 19
3swp_D	2e-26	7	156	23	168	NAC domain-containing protein 19
4dul_A	2e-26	7	156	20	165	NAC domain-containing protein 19
4dul_B	2e-26	7	156	20	165	NAC domain-containing protein 19
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.07G048000.2.p

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003528754.1	0.0	NAC domain-containing protein 92
TrEMBL	I1KHM2	0.0	I1KHM2_SOYBN; Uncharacterized protein
STRING	GLYMA07G05360.1	0.0	(Glycine max)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35580.3	2e-42	NAC transcription factor-like 9

Link Out ? help Back to Top
Phytozome	Glyma.07G048000.2.p