PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.07G048000.1.p
Common NameGLYMA_07G048000, LOC100785870
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family NAC
Protein Properties Length: 406aa    MW: 45872.1 Da    PI: 4.619
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.07G048000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1211.1e-3761383128
                  NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk.......kvkaeekewyfFskrdkkyatgkrknratksgyWka 85 
                          +G+ F+Pt+eelv++yLk+ + g++ ++ +vi+ +d+++vePwd p        +++ ++ +w+fFs+ d ky+++kr nr+tk g+Wk 
  Glyma.07G048000.1.p   6 VGLGFRPTEEELVDFYLKHMLLGNDPRA-HVIPVIDLCDVEPWDVPVmlaksssTIRFGDPDWFFFSPVDFKYSRSKRFNRTTKCGFWKP 94 
                          6999*********************998.99***************546655544444888***************************** PP

                  NAM  86 tgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                          tg d+ev +  +++l+g+kktLvfykgr ++g+k+ Wv+hey++
  Glyma.07G048000.1.p  95 TGVDREVRTFeTNTLIGTKKTLVFYKGRVSRGVKSIWVIHEYHA 138
                          *******98757778***************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100543.3094156IPR003441NAC domain
SuperFamilySSF1019411.96E-426156IPR003441NAC domain
PfamPF023652.4E-206137IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 406 aa     Download sequence    Send to blast
MDDDIVGLGF RPTEEELVDF YLKHMLLGND PRAHVIPVID LCDVEPWDVP VMLAKSSSTI  60
RFGDPDWFFF SPVDFKYSRS KRFNRTTKCG FWKPTGVDRE VRTFETNTLI GTKKTLVFYK  120
GRVSRGVKSI WVIHEYHAVT FHESQRTFVL CRLMKKPGKT TEGGTDALIC DEGEPSRHMI  180
SVYGNQEKAE GIPSGSTCIG METILQATPQ AEKYFSPIHQ SQTGIEEEAS FSSYPFNNAY  240
FRNENNPMQT SFETTEEMQT SFEITEEVEF LNSILVDESF VIDKESMHVF VNSSTQSESL  300
SDTDAEVVSK LDGNTVDIST VCHEYPNSDE YHSSKRLKSS HDVVHGGICF PSSNPEAKQE  360
TKESMFQDDL WGLETSSCES TADKPLKISC IEISSSPSTS WRWEN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A5e-26715620165NO APICAL MERISTEM PROTEIN
1ut4_B5e-26715620165NO APICAL MERISTEM PROTEIN
1ut7_A5e-26715620165NO APICAL MERISTEM PROTEIN
1ut7_B5e-26715620165NO APICAL MERISTEM PROTEIN
4dul_A5e-26715620165NAC domain-containing protein 19
4dul_B5e-26715620165NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.07G048000.1.p
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003528754.10.0NAC domain-containing protein 92
TrEMBLI1KHM10.0I1KHM1_SOYBN; Uncharacterized protein
STRINGGLYMA07G05360.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20652586
Representative plantOGRP9281314
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35580.32e-41NAC transcription factor-like 9