PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.07G044800.1.p
Common NameGLYMA_07G044800
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family M-type_MADS
Protein Properties Length: 285aa    MW: 31978.8 Da    PI: 10.1932
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.07G044800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF60.12.7e-192772247
                         ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS
               SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47
                          +e   +r+vtfskR+ g++ K  ELSvLC++e avii s++gkly
  Glyma.07G044800.1.p 27 EVEQRNRRYVTFSKRKLGLFNKLTELSVLCQVETAVIITSQNGKLY 72
                         678999***************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.4E-221877IPR002100Transcription factor, MADS-box
PROSITE profilePS5006622.6941878IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-162040IPR002100Transcription factor, MADS-box
SuperFamilySSF554558.11E-2120102IPR002100Transcription factor, MADS-box
PfamPF003191.0E-172873IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-164055IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-165576IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MDSSSRAKTV NAATMQNKKR GKIEIKEVEQ RNRRYVTFSK RKLGLFNKLT ELSVLCQVET  60
AVIITSQNGK LYSCGYPDPD AVVRRYLTGG PPLRRNRAIK REQQEFVEQQ RLEYEAVQNQ  120
LKEEKKRLQE IKGTQNNNGF CFAAPWWNLP TEGMGLEDLE QFKTSLERLK FNLVGALQEK  180
QMNSVPSMPH AAMLPPMPST VVPPVPHAAM VPPMSSTMVP PVPHAAMVPP MMPPQFQNMS  240
LLRAQRLSGN QVQDDYWRSA AIASTASTFA SNVFGSLKNY GYTT*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.07G044800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003529854.20.0agamous-like MADS-box protein AGL28
TrEMBLK7KZN00.0K7KZN0_SOYBN; Uncharacterized protein
STRINGGLYMA07G05001.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF132271027
Representative plantOGRP1617761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.11e-22AGAMOUS-like 62