PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

ERF

Protein Properties

Length: 393aa MW: 43190.9 Da PI: 4.6834

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.07G044300.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	59.7	6.7e-19	118	167	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+G+r+++ +g+W+AeIrdp++ r++lg+f taeeAa+a++a +++++g Glyma.07G044300.1.p 118 QYRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTFSTAEEAARAYDAEARRIRG 167 69*****.******954...4**********************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51032	24.118	118	175	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	5.04E-22	118	176	IPR016177	DNA-binding domain
CDD	cd00018	1.12E-31	118	176	No hit	No description
Gene3D	G3DSA:3.30.730.10	1.4E-32	118	176	IPR001471	AP2/ERF domain
SMART	SM00380	3.3E-37	118	181	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.4E-11	119	130	IPR001471	AP2/ERF domain
Pfam	PF00847	1.2E-11	119	167	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.4E-11	141	157	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 393 aa Download sequence Send to blast
MCGGAIISDF IPAGPAGGAQ RVTADILWPN LRKRFSKSLL DDDFEAGFRE FEDDSEIEDV 60 DDEDDEEEEE LKKKKPFGFS RSNNKAASKP LSRGATTVKS VESKGQAEKC AKRKRKNQYR 120 GIRQRPWGKW AAEIRDPRKG VRVWLGTFST AEEAARAYDA EARRIRGKKA KVNFPDEPSG 180 AASSKRLKAN PEAQPMKKNL NSVKPKINQM FNFGDNLEGY YSPIDQVEQK PLVNQYVNRA 240 PFAGNGVQVS PVTPSADVTA YFSSEHSSSS FDYSDLGWGE QVPKTPEISS MLSAAPLDGE 300 SQFVQGAADQ NQKKNNLLDM ASVQDDSAKT LSEELADIES QLKFFETPSF LDEAWADAAL 360 ASLLSEDASQ DAAGNPMNLW SFDDLPSMAG VF*

Sequence ? help Back to Top

Protein Sequence Length: 393 aa Download sequence Send to blast

MCGGAIISDF IPAGPAGGAQ RVTADILWPN LRKRFSKSLL DDDFEAGFRE FEDDSEIEDV  60
DDEDDEEEEE LKKKKPFGFS RSNNKAASKP LSRGATTVKS VESKGQAEKC AKRKRKNQYR  120
GIRQRPWGKW AAEIRDPRKG VRVWLGTFST AEEAARAYDA EARRIRGKKA KVNFPDEPSG  180
AASSKRLKAN PEAQPMKKNL NSVKPKINQM FNFGDNLEGY YSPIDQVEQK PLVNQYVNRA  240
PFAGNGVQVS PVTPSADVTA YFSSEHSSSS FDYSDLGWGE QVPKTPEISS MLSAAPLDGE  300
SQFVQGAADQ NQKKNNLLDM ASVQDDSAKT LSEELADIES QLKFFETPSF LDEAWADAAL  360
ASLLSEDASQ DAAGNPMNLW SFDDLPSMAG VF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	2e-20	117	177	13	74	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.2886	0.0	cotyledon\| flower\| hypocotyl\| leaf\| meristem\| pod\| root\| seed coat\| somatic embryo\| stem

Function -- GeneRIF ? help Back to Top
Overexpression of GmERF7 in tobacco plants led to higher levels of chlorophyll and soluble carbohydrates and a lower level of malondialdehyde compared with wild-type tobacco plants under salt stress conditions, which indicated that GmERF7 enhanced salt tolerance in transgenic plants. [PMID: 23111158]

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.07G044300.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JN416602	0.0	JN416602.1 Glycine max cultivar Jilin 32 ethylene-responsive transcription factor 7 (ERF7) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001341213.1	0.0	ethylene-responsive transcription factor 7
Refseq	XP_028239255.1	0.0	ethylene-responsive transcription factor RAP2-12-like
TrEMBL	A0A445JS98	0.0	A0A445JS98_GLYSO; Ethylene-responsive transcription factor 1 isoform A
TrEMBL	H2D4C4	0.0	H2D4C4_SOYBN; Ethylene-responsive transcription factor 7
STRING	GLYMA07G04950.7	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4808	32	52
Representative plant	OGRP6	16	1718

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G53910.2	9e-41	related to AP2 12

Link Out ? help Back to Top
Phytozome	Glyma.07G044300.1.p
Entrez Gene	100818646

Publications ? help Back to Top
Zhai Y, et al. Isolation and molecular characterization of GmERF7, a soybean ethylene-response factor that increases salt stress tolerance in tobacco. Gene, 2013. 513(1): p. 174-83 [PMID:23111158]