PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.07G042800.1.p
Common NameGLYMA_07G042800, LOC100812599
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family Trihelix
Protein Properties Length: 369aa    MW: 39856.5 Da    PI: 10.3244
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.07G042800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix48.32.7e-1570156186
             trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                          +W++  + +Li+a  e+  +l+rg+lk+++W+ev++ +      ++  ++ +qCk++++ ++k+yk +k+    +   ++s++p++d+le
  Glyma.07G042800.1.p  70 CWSEGATAVLIDAWGERYLELSRGNLKQKHWKEVADIVsvreDYTKAPKTDIQCKNRIDTVKKKYKSEKAKIAAG---ATSKWPFYDRLE 156
                          7*************************************85444445556778******************99986...6779******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.4E-2568158No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MDDDDEIQSH PSPASGSPPS SPRANGRITV TVAAPAPPPP PNSLALALPI QQPAKGNGGG  60
GGGGGGREDC WSEGATAVLI DAWGERYLEL SRGNLKQKHW KEVADIVSVR EDYTKAPKTD  120
IQCKNRIDTV KKKYKSEKAK IAAGATSKWP FYDRLEQLIG PSAKIPGVGG ASGTSAAGNS  180
NLQPQKVPLG IPVGVRGGAN QFNHPHKQPQ PVPLKNQKIQ FRRRGPPVES DSEERDASSP  240
ASSDSFPPES FERKRPRLMS SNTTKGSGER RKAKGWGSAV RELTQAILKF GEAYEQAESS  300
KLQQVVEMEK QRMKFAKDLE LQRMQFFMKT QVEISQLKLG RKGGNPSNNH HGTTNNNNSN  360
HNNNSGSE*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.193130.0leaf| stem
Functional Description ? help Back to Top
Source Description
UniProtTranscription regulator that may repress the maturation program during early embryogenesis. {ECO:0000269|PubMed:21330492}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.07G042800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150420.0AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003528651.10.0trihelix transcription factor ASIL2
SwissprotQ9LJG81e-106ASIL2_ARATH; Trihelix transcription factor ASIL2
TrEMBLI1KHF70.0I1KHF7_SOYBN; Uncharacterized protein
STRINGGLYMA07G04790.40.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF79193044
Representative plantOGRP4871684
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14180.11e-46sequence-specific DNA binding transcription factors