PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.07G038400.1.p
Common NameGLYMA_07G038400, LOC100806024
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family GRF
Protein Properties Length: 346aa    MW: 39463.5 Da    PI: 8.4508
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.07G038400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC79.14.2e-2576120145
                  WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                          d+epgrCrRtDGKkWRCs+++++++k+CErH+hrgr+rsrk++e 
  Glyma.07G038400.1.p  76 DPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGRNRSRKPVEV 120
                          79****************************************985 PP
2QLQ52.91.1e-181045136
                  QLQ  1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36
                         s+FT +Q+q+L++Q+l++Ky++ + P+Pp+L+  i+
  Glyma.07G038400.1.p 10 SPFTQTQWQELEHQALVFKYMVTGTPIPPDLIYSIK 45
                         89*****************************98886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009512.3E-111046IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166620.8961146IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088805.4E-141144IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.32576120IPR014977WRC domain
PfamPF088793.1E-2177119IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009739Biological Processresponse to gibberellin
GO:0030912Biological Processresponse to deep water
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MMSASARNRS PFTQTQWQEL EHQALVFKYM VTGTPIPPDL IYSIKRSLDT SISSRLFPHH  60
PIGWGCFEMG FGRKVDPEPG RCRRTDGKKW RCSKEAYPDS KYCERHMHRG RNRSRKPVEV  120
SSAISTATNT SQTIPSSYTR NLSLTNPNMT PPSSFPFSPL PSSMPIESQP FSQSYQNSSL  180
NPFFYSQSTS SRPPDADFPP QDATTHQLFM DSGSYSHDEK NYRHVHGIRE DVDERAFFPE  240
ASGSARSYTE SYQQLSMSSY KSYSNSNFQN INDATTNPRQ QEQQQQQHCF VLGTDFKSTR  300
PTKEKEAETA TGQRPLHRFF GEWPPKNTTD SWLDLASNSR IQTDE*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.216700.0cotyledon| somatic embryo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.07G038400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2359130.0AC235913.2 Glycine max clone GM_WBc0225O09, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003529835.10.0growth-regulating factor 5
RefseqXP_028239418.10.0growth-regulating factor 5-like
TrEMBLA0A445JS100.0A0A445JS10_GLYSO; Growth-regulating factor 1 isoform A
TrEMBLI1KHB30.0I1KHB3_SOYBN; Uncharacterized protein
STRINGGLYMA07G04290.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF97443137
Representative plantOGRP4601684
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13960.13e-65growth-regulating factor 5