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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.07G038200.1.p | ||||||||
Common Name | GLYMA_07G038200, LOC100805489 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | AP2 | ||||||||
Protein Properties | Length: 580aa MW: 63750.9 Da PI: 6.8225 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 47.8 | 3.6e-15 | 246 | 305 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++gr++A+++d + g ++ ++++lg ++ +e+Aaka++ a+ k++g Glyma.07G038200.1.p 246 SQYRGVTRHRWTGRYEAHLWDnSCRkEGqtRKgRQVYLGGYDKEEKAAKAYDLAAIKYWG 305 78*******************655454478446*************************98 PP | |||||||
2 | AP2 | 48.1 | 3e-15 | 348 | 399 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g Glyma.07G038200.1.p 348 SVYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 399 78****************988532...5************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 1.18E-16 | 246 | 315 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.6E-11 | 246 | 305 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.71E-21 | 246 | 315 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 1.5E-15 | 247 | 314 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 18.769 | 247 | 313 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.1E-29 | 247 | 319 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.3E-6 | 248 | 259 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 5.9E-10 | 348 | 399 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 9.15E-18 | 348 | 409 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 9.19E-25 | 348 | 409 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 1.4E-18 | 349 | 407 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.006 | 349 | 407 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.6E-34 | 349 | 413 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.3E-6 | 389 | 409 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 580 aa Download sequence Send to blast |
MSNWLGFSLT PHLRIDEEFE RENQERGAGG GGGYHHPSPS SHPHLSVMPL RSDGSLCVAD 60 SFSHSAASQE WRYDSAIGGG NSNEKGPKLE DFLGGYSNSP TKVFCQDTQH DQNQSQNNVS 120 KINVNVAPSF CTNAEIETGE SLANPYPHQS FHAYNDNSHA LIPTNGMYKS WLAQTQFSSD 180 GKPSTEANGC NFQSLSLSMS PGMQNGVGAI SSVQVSEDSR KRVMAKSHAR EPVPRKSIDT 240 FGQRTSQYRG VTRHRWTGRY EAHLWDNSCR KEGQTRKGRQ VYLGGYDKEE KAAKAYDLAA 300 IKYWGPTTHI NFPLSTYEKE LEEMKHMTRQ EFVANLRRKS SGFSRGASVY RGVTRHHQHG 360 RWQARIGRVA GNKDLYLGTF STQEEAAEAY DIAAIKFRGT SAVTNFDISR YDVKRICSSS 420 TLIAGDLAKR SPKESPALVP AEDFNSCGSS MPPASQPPPL AITDGEHSDE LSNMMWNANS 480 DVHAQNENGA NINNNVTESS SQQVSPSSNK DALNPQSPKC SVGLPNEFGV SGADYGHGYF 540 TLDGPKYDDG NNENDHMSTN RLGNLGLVNQ VPMFALWNE* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.56626 | 0.0 | somatic embryo |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, seedlings, inflorescence, and siliques. Also detected at low levels in leaves. {ECO:0000269|PubMed:15988559}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.07G038200.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC235913 | 0.0 | AC235913.2 Glycine max clone GM_WBc0225O09, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006583159.1 | 0.0 | AP2-like ethylene-responsive transcription factor AIL1 | ||||
Refseq | XP_028239191.1 | 0.0 | AP2-like ethylene-responsive transcription factor AIL1 | ||||
Swissprot | Q1PFE1 | 1e-140 | AIL1_ARATH; AP2-like ethylene-responsive transcription factor AIL1 | ||||
TrEMBL | A0A445JRV5 | 0.0 | A0A445JRV5_GLYSO; AP2-like ethylene-responsive transcription factor AIL1 | ||||
TrEMBL | K7KZJ1 | 0.0 | K7KZJ1_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA07G04265.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF10274 | 31 | 37 | Representative plant | OGRP112 | 17 | 209 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72570.1 | 1e-137 | AP2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.07G038200.1.p |
Entrez Gene | 100805489 |
Publications ? help Back to Top | |||
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