PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.07G037100.2.p
Common NameGLYMA_07G037100, LOC100775511
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB_related
Protein Properties Length: 608aa    MW: 67148.4 Da    PI: 6.4613
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.07G037100.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.27.8e-08533581348
                          SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                          +WT  E  +lv++v + G g+W+ I r        Rt  ++k++w+++l
  Glyma.07G037100.2.p 533 AWTLVEVIKLVEGVSRCGAGRWSEIKRLSFasySYRTSVDLKDKWRNLL 581
                          7**************************99999*99************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.948526585IPR017930Myb domain
Gene3DG3DSA:1.10.10.607.0E-11528584IPR009057Homeodomain-like
SMARTSM007178.8E-8530583IPR001005SANT/Myb domain
SuperFamilySSF466899.79E-15532593IPR009057Homeodomain-like
CDDcd116605.80E-19532582No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0031627Biological Processtelomeric loop formation
GO:0000783Cellular Componentnuclear telomere cap complex
GO:0003691Molecular Functiondouble-stranded telomeric DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 608 aa     Download sequence    Send to blast
METVVGIEDN DDGKFEDSGV DRSSSALSSP KQIANPIVYK LVRVEGDGRL VPATDDEVME  60
VGDFLEYENS EMHVVANTGQ SLECISIERS SSGKLRLECK EGTAEADLGE LNAKLQILQK  120
VKEEKQRISC GSPAHSHVNI DSQCSADKFP VIDGKVQSET PCQEIPSIAS SLNYTHSNQS  180
GSIDQCSRPS EGVIESGSSA SAVYSNLKPD LSMSDGEICL DKLSIRELHE LFKVTFGRET  240
TVKDKQWLKR RIAMSLTNSC DVSATTFIIK NNKIVRKFEE ESSGNMNAGS LISSGNMTEE  300
EDVNFKDSSA VNACGIEDNQ VVSETRPEIG LEDENYQTGQ RAAKRIRRPT KRYIEELSEN  360
ESREHNPRLS ISNKPMGLGH VSPTLNVRPA RNAFSEVRTY GTRLDSLGGS DVQIPCVSRV  420
RRSRPRKDIA SLMKFHPTSM GEAEKLSNKL LEHSSDAGSE FPDKVLKSRM PSKFHQPSSS  480
EPVKEQCPVI GPVELRQELR PKRADPSSHT SDDNNIVTVP TAKGGMRRKH HRAWTLVEVI  540
KLVEGVSRCG AGRWSEIKRL SFASYSYRTS VDLKDKWRNL LKASFALTPA PADEGVKIYD  600
TNLNLIL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1420426RRSRPRK
2420427RRSRPRKD
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.242290.0cotyledon| flower| hypocotyl| leaf| root| somatic embryo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.07G037100.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ5607070.0FJ560707.1 Glycine max transcription factor MYB884 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014632818.10.0uncharacterized protein LOC100775511 isoform X3
TrEMBLA0A445JS020.0A0A445JS02_GLYSO; Uncharacterized protein
TrEMBLI1KHA10.0I1KHA1_SOYBN; Uncharacterized protein
STRINGGLYMA07G04160.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.15e-98TRF-like 6