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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.07G027000.1.p | ||||||||
Common Name | GLYMA_07G027000, LOC102660200 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | ERF | ||||||||
Protein Properties | Length: 212aa MW: 23067.2 Da PI: 10.8145 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 65.2 | 1.3e-20 | 81 | 131 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkklege 56 y+GVr ++ +grW AeIrd r r++lg+f+taeeAa+a++aa+++++g+ Glyma.07G027000.1.p 81 SYRGVRKRP-WGRWSAEIRDrI----GRCRHWLGTFDTAEEAARAYDAAARRMRGA 131 69*******.**********32....25**************************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 7.83E-16 | 80 | 139 | No hit | No description |
SMART | SM00380 | 1.2E-32 | 81 | 144 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.458 | 81 | 138 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 9.15E-22 | 81 | 138 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.2E-14 | 81 | 130 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 7.3E-30 | 81 | 138 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.3E-11 | 82 | 93 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.3E-11 | 104 | 120 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 212 aa Download sequence Send to blast |
MNGELFLHAP TTTTTNFLLP KKSQTASSET LDPSQKLRRY ETALEGIAAV VGEHVLFGTT 60 LSHVSETPKK TNGVSSSLSK SYRGVRKRPW GRWSAEIRDR IGRCRHWLGT FDTAEEAARA 120 YDAAARRMRG AKARTNFKIP SVLPLSPEGV HGSAVKPKTA RSNARKCSSV EQLFSGVPQL 180 RKDDGIGENG NVEVDLKLGV NFGVTSSRMV L* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-17 | 73 | 137 | 7 | 71 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.07G027000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006583113.1 | 1e-155 | ethylene-responsive transcription factor ERF084 | ||||
Refseq | XP_028238561.1 | 1e-155 | ethylene-responsive transcription factor ERF084-like | ||||
TrEMBL | A0A445JRC0 | 1e-154 | A0A445JRC0_GLYSO; Ethylene-responsive transcription factor ERF084 | ||||
TrEMBL | K7KZB3 | 1e-154 | K7KZB3_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA07G03041.1 | 1e-155 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF13023 | 26 | 31 |
Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G80580.1 | 2e-25 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.07G027000.1.p |
Entrez Gene | 102660200 |