PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.07G018500.3.p | ||||||||
Common Name | GLYMA_07G018500, LOC100802121 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | bHLH | ||||||||
Protein Properties | Length: 318aa MW: 34878.9 Da PI: 7.7559 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 12 | 0.0004 | 184 | 222 | 12 | 55 |
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R +++ +++ L +l+ + +K + a++L +A+ YI+ Lq Glyma.07G018500.3.p 184 RKEKLGDRITALHQLVSPF-----GKTDTASVLLEAIGYIRFLQ 222 6677889999999999998.....8******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 11.706 | 172 | 221 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 3.66E-10 | 182 | 233 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 9.57E-6 | 182 | 226 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 4.3E-7 | 186 | 229 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045944 | Biological Process | positive regulation of transcription from RNA polymerase II promoter | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0001046 | Molecular Function | core promoter sequence-specific DNA binding | ||||
GO:0001228 | Molecular Function | transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 318 aa Download sequence Send to blast |
MMAGNPNWWT MHPPSLIPPQ YVLGSSSIPF NSSTQNQEPP HSLSQLLFTG LPGEEERVAF 60 SHFQSKKLDE WNEQMLNPSS IVPMADVIKQ EVSQSGNLYH HGHDQEFQVS GAPWSHMVPV 120 SSSPRSSVAS FSSNNLLDFT YNKTDHRKNQ LPDHTSECNS TATGGVYKKT KSQPSSSQPP 180 LKVRKEKLGD RITALHQLVS PFGKTDTASV LLEAIGYIRF LQGQIEALSS PYLGNGSKNM 240 RNPQSVHGER NSVFPEDPGQ LLNDNGLKRK GAPNQDAKDK PRDLKSRGLC LVPVSCTQHV 300 GNENGADYWA PAYGSGF* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.3609 | 0.0 | cotyledon| flower| leaf| meristem| root| stem |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.07G018500.3.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015042 | 9e-99 | AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006583063.1 | 0.0 | transcription factor bHLH68 isoform X2 | ||||
Refseq | XP_028238923.1 | 0.0 | transcription factor bHLH68-like isoform X2 | ||||
Swissprot | Q8S3D1 | 2e-69 | BH068_ARATH; Transcription factor bHLH68 | ||||
TrEMBL | A0A0B2P9I4 | 0.0 | A0A0B2P9I4_GLYSO; Transcription factor bHLH68 | ||||
TrEMBL | I1KGL9 | 0.0 | I1KGL9_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA07G02120.4 | 0.0 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G29100.1 | 2e-66 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.07G018500.3.p |
Entrez Gene | 100802121 |
Publications ? help Back to Top | |||
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