PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.07G017300.1.p
Common NameGLYMA_07G017300, LOC100804056
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ERF
Protein Properties Length: 208aa    MW: 22850.7 Da    PI: 4.798
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.07G017300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2574.7e-183383155
                  AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                         + y+GVr +  +g+Wv+eIr+p++   + r++lg+f t+e+Aa+a++ a++ ++g
  Glyma.07G017300.1.p 33 PVYHGVRKRN-WGKWVSEIREPRK---KSRIWLGTFSTPEMAARAHDVAALTIKG 83
                         68*****887.**********843...6**********************99887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.8E-123383IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.6E-313492IPR001471AP2/ERF domain
SuperFamilySSF541714.45E-213491IPR016177DNA-binding domain
SMARTSM003801.5E-333497IPR001471AP2/ERF domain
PROSITE profilePS5103222.8663491IPR001471AP2/ERF domain
CDDcd000186.02E-323592No hitNo description
PRINTSPR003677.1E-103546IPR001471AP2/ERF domain
PRINTSPR003677.1E-105773IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    Send to blast
MTQQTTTSSS SHSGPRAQAQ KQSKRPRDCS KHPVYHGVRK RNWGKWVSEI REPRKKSRIW  60
LGTFSTPEMA ARAHDVAALT IKGQSAILNF PEIADLLPRP VTCSPRDIQT AATAAASMVK  120
FDPVTQSSDS ETPESSELSE IVELPNIEDS SVDSTPEFVL VDVVDSWVFP PMGMGSEGIE  180
FCAAFSDELF PQQSFIGSEI EILPIWD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-1930961077Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.302670.0leaf| root
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.07G017300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0310810.0KT031081.1 Glycine max clone HN_CCL_165 AP2-EREBP transcription factor (Glyma08g21650.1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003529759.11e-151dehydration-responsive element-binding protein 3
SwissprotQ9LYD31e-58DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBLK7KZ311e-150K7KZ31_SOYBN; Uncharacterized protein
STRINGGLYMA07G02001.11e-151(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19234263
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.11e-60ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Galuschka C,Schindler M,Bülow L,Hehl R
    AthaMap web tools for the analysis and identification of co-regulated genes.
    Nucleic Acids Res., 2007. 35(Database issue): p. D857-62
    [PMID:17148485]