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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Glyma.07G016000.1.p |
| Common Name | GLYMA_07G016000, LOC100800332 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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| Family |
HB-other |
| Protein Properties |
Length: 274aa MW: 30820 Da PI: 5.1195 |
| Description |
HB-other family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Glyma.07G016000.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 15.9 | 2.3e-05 | 14 | 70 | 7 | 51 |
--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC..........TS-HHHHHHHHHHH CS
Homeobox 7 ftkeqleeLeelFek..nrypsaeereeLAkkl..........gLterqVkvWFqNr 51
++++++ eLe+ +e + +++++ e+Ak+ +L+ +qV+ WF+N
Glyma.07G016000.1.p 14 LSSDEILELERIYEDmgGKVLNRKSCLEIAKRFssssngagktSLSWQQVRLWFKNN 70
578999********6669*************************************95 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 274 aa
Download sequence Send
to blast |
MEKLGLTESP FPKLSSDEIL ELERIYEDMG GKVLNRKSCL EIAKRFSSSS NGAGKTSLSW 60
QQVRLWFKNN QRMLLGKDIS SSDLLKISAD LAESPLLGNG KGKQAAALDD LGFEARSTKD 120
IAWHDVSMFL NYRVLSTGEL EVRVRYAGFG KEQDEWMNVK LGVRERSIPL EPSECHKVKD 180
GDLVLCFLER EDYALYCDAR IVKIHRKIHD PTECTCTFIV RFVHDNTEEG VSFDRICCRP 240
TQEESACYPD LALDPTSSPS LNVTLNTIES LWG*
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| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 4iup_A | 9e-57 | 110 | 242 | 3 | 135 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
| 4iup_B | 9e-57 | 110 | 242 | 3 | 135 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
| 4iuq_A | 9e-57 | 110 | 242 | 3 | 135 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
| 4iuq_B | 9e-57 | 110 | 242 | 3 | 135 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
| 4iur_A | 9e-57 | 110 | 242 | 3 | 135 | SHH1 SAWADEE |
| 4iur_B | 9e-57 | 110 | 242 | 3 | 135 | SHH1 SAWADEE |
| 4iut_A | 9e-57 | 110 | 242 | 3 | 135 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
| 4iut_B | 9e-57 | 110 | 242 | 3 | 135 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
| 4iuu_A | 9e-57 | 110 | 242 | 3 | 135 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
| 4iuu_B | 9e-57 | 110 | 242 | 3 | 135 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
| 4iuv_A | 9e-57 | 110 | 242 | 3 | 135 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
| 4iuv_B | 9e-57 | 110 | 242 | 3 | 135 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
| Search in ModeBase |
| Functional Description ? help
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| Source |
Description |
| UniProt | Involved in RNA-directed DNA methylation (RdDM). Required for the silencing of some endogenous RdDM targets and accumulation of 24-nt siRNAs, but not for the production of Pol V-dependent transcripts. Functions in transcriptional silencing through both DNA methylation-dependent and -independent pathways. Required for both maintenance and de-novo DNA methylation. Plays a role in the recruitment of Pol IV to genomic regions associated with K9 methylated histone H3 that are targets for RdDM. {ECO:0000269|PubMed:21811420, ECO:0000269|PubMed:22064704, ECO:0000269|PubMed:23636332, ECO:0000269|PubMed:23637343}. |
| Best hit in Arabidopsis thaliana ? help
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| Hit ID |
E-value |
Description |
| AT3G18380.1 | 5e-47 | sequence-specific DNA binding transcription factors;sequence-specific DNA binding |
