PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.07G012100.1.p
Common NameGLYMA_07G012100, LOC100790822
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family Dof
Protein Properties Length: 212aa    MW: 22748 Da    PI: 7.7322
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.07G012100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof126.95.9e-401777262
               zf-Dof  2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62
                         ++++lkcprCds+ntkfCyynny+lsqPr+fCk+CrryWtkGGalrn+PvGgg+rk  k+s
  Glyma.07G012100.1.p 17 EQEQLKCPRCDSNNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGALRNIPVGGGSRKTTKRS 77
                         57899***************************************************98876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074784.0E-271369IPR003851Zinc finger, Dof-type
PfamPF027014.1E-331975IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.3662175IPR003851Zinc finger, Dof-type
PROSITE patternPS0136102359IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MQDPTAFQGV KPPQFPEQEQ LKCPRCDSNN TKFCYYNNYN LSQPRHFCKN CRRYWTKGGA  60
LRNIPVGGGS RKTTKRSSST LSKRSSAPSS SSAVSDPDPT RICTNPVDQD QRVLNIGGGS  120
FSSLLASSGH FGTLLEGLNP SGSGLKMGEF VEGVSSDPGL NLDSGLNPDL QVQSNENSES  180
FLGLQNGDSS CWNGTHGWSD LAIYTPGPSF Q*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.286770.0meristem
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.07G012100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2359040.0AC235904.2 Glycine max clone GM_WBc0179J02, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003529737.11e-154dof zinc finger protein DOF3.1
RefseqXP_028238849.11e-154dof zinc finger protein DOF3.1-like
SwissprotO821556e-44DOF17_ARATH; Dof zinc finger protein DOF1.7
TrEMBLA0A445JQM71e-153A0A445JQM7_GLYSO; Dof zinc finger protein DOF1.7
TrEMBLK7KYZ61e-153K7KYZ6_SOYBN; Uncharacterized protein
STRINGGLYMA07G01461.11e-154(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF61813351
Representative plantOGRP3817445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51700.12e-37DOF zinc finger protein 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]