PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.07G009100.1.p
Common NameGLYMA_07G009100, LOC100785687
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C2H2
Protein Properties Length: 499aa    MW: 54519.2 Da    PI: 8.907
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.07G009100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.23e-0587109123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          + C++C+k F r  nL+ H r H
  Glyma.07G009100.1.p  87 FICEICNKGFQRDQNLQLHRRGH 109
                          89*******************88 PP
2zf-C2H212.10.00059163185123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          +kC +C+k +  +s+ k H +t+
  Glyma.07G009100.1.p 163 WKCDKCSKKYAVQSDWKAHSKTC 185
                          58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576679.2E-786109No hitNo description
Gene3DG3DSA:3.30.160.601.3E-586109IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF121716.0E-587109IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015710.84587109IPR007087Zinc finger, C2H2
SMARTSM003550.02287109IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028089109IPR007087Zinc finger, C2H2
SMARTSM00355210128158IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.605.2E-4151184IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576679.2E-7158183No hitNo description
SMARTSM00355150163183IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 499 aa     Download sequence    Send to blast
MEMKGFMFYQ QQQQQQIVEE NMSNLTSASG EASASSGNRT EIGTSYMAPP PTQIQPPKKK  60
RNLPGNPDPD AEVIALSPKS LLATNRFICE ICNKGFQRDQ NLQLHRRGHN LPWKLKQRTS  120
KEVRKKVYVC PEPSCVHHDP SRALGDLTGI KKHFCRKHGE KKWKCDKCSK KYAVQSDWKA  180
HSKTCGTREY RCDCGTLFSR RDSFITHRAF CDALAEESAR AIANPLLPPQ QQQSSSSHMS  240
TLQTQFNPQN LHAFPLKKEM PPWLGPPATV VVDHHLSSSS SIMFSPPHQE NPNPSLGPTL  300
AAYQTVPNPH MSATALLQKA AQMGATMSRS GSTPAMTGPH HHAHVSHFGL NLSSREDTTT  360
TTPSTTTTNA NTATVFSHGL LSSSPLGNKA AAAAAVSSSA PSLLHDVINS FSSPSAFEGT  420
PFEDAFIQSS KKLDDDHNLY LHDTFSKTSG AAGNNINEGL TRDFLGLRPL SHADILTIAG  480
IGNCIHDQQN QSQKPWQG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C9e-36159220364Zinc finger protein JACKDAW
5b3h_F9e-36159220364Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1113125KLKQRTSKEVRKK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.591490.0cotyledon| pod
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.07G009100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150420.0AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006583009.10.0protein indeterminate-domain 7
RefseqXP_006583010.10.0protein indeterminate-domain 7
RefseqXP_028238807.10.0protein indeterminate-domain 7-like
RefseqXP_028238808.10.0protein indeterminate-domain 7-like
SwissprotQ9LRW71e-133IDD11_ARATH; Protein indeterminate-domain 11
TrEMBLA0A445JQH40.0A0A445JQH4_GLYSO; Protein indeterminate-domain 11 isoform A
TrEMBLI1KGB50.0I1KGB5_SOYBN; Uncharacterized protein
STRINGGLYMA07G01130.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18134275
Representative plantOGRP9516242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55110.11e-104indeterminate(ID)-domain 7
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]