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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.07G007200.1.p | ||||||||
Common Name | GLYMA_07G007200, LOC780537 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | MYB_related | ||||||||
Protein Properties | Length: 286aa MW: 31103 Da PI: 10.0611 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 42 | 2.1e-13 | 5 | 56 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47 +++WT++E++ l+ +v+++G+g Wk I + + + R+ ++k++w+++ Glyma.07G007200.1.p 5 KQKWTQDEEDALIAGVEKHGPGKWKNILKDPQfapflTSRSNIDLKDKWRNL 56 79************************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.532 | 1 | 62 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.25E-16 | 2 | 58 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 4.8E-15 | 4 | 56 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.1E-8 | 4 | 59 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.9E-10 | 5 | 56 | IPR001005 | SANT/Myb domain |
CDD | cd11660 | 1.28E-21 | 6 | 56 | No hit | No description |
SMART | SM00526 | 5.1E-16 | 117 | 183 | IPR005818 | Linker histone H1/H5, domain H15 |
Gene3D | G3DSA:1.10.10.10 | 3.9E-14 | 117 | 191 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF46785 | 4.3E-15 | 118 | 199 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
PROSITE profile | PS51504 | 23.622 | 119 | 188 | IPR005818 | Linker histone H1/H5, domain H15 |
Pfam | PF00538 | 1.8E-11 | 121 | 183 | IPR005818 | Linker histone H1/H5, domain H15 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006334 | Biological Process | nucleosome assembly | ||||
GO:0000786 | Cellular Component | nucleosome | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 286 aa Download sequence Send to blast |
MGNQKQKWTQ DEEDALIAGV EKHGPGKWKN ILKDPQFAPF LTSRSNIDLK DKWRNLSVSN 60 GAQGSKEKSR VPKPKAFSAP PATTATTATP QNASPAPQSA SSDAAVAPDA SQNDQDAKNP 120 PRYNALIFEA LSALKDSNGS DMNAIIKFME QKNHQVNQNF KRALSTRLRR LVSQGKLEKV 180 PNGYKVKKEA SSGTKSPSPK AKDVRPPQPQ RQSPASLFMT NDTLKEAADT AAYRVADAES 240 KSYLAAEAVK EAEKISLLVE HSDSMLQLAK DIYEQCSRGE IILLA* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.29790 | 0.0 | root| somatic embryo |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00652 | PBM | Transfer from LOC_Os01g51154 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.07G007200.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT099371 | 0.0 | BT099371.1 Soybean clone JCVI-FLGm-23H24 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003529706.1 | 0.0 | telomere repeat-binding factor 4 isoform X1 | ||||
Refseq | XP_028238772.1 | 0.0 | telomere repeat-binding factor 4-like isoform X1 | ||||
TrEMBL | A0A445JQD3 | 0.0 | A0A445JQD3_GLYSO; Telomere repeat-binding factor 5 isoform A | ||||
TrEMBL | I1KG92 | 0.0 | I1KG92_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA07G00930.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3228 | 29 | 58 | Representative plant | OGRP855 | 16 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72740.2 | 1e-66 | MYB_related family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.07G007200.1.p |
Entrez Gene | 780537 |