PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.06G323400.3.p | ||||||||
Common Name | GLYMA_06G323400, LOC100793266 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | FAR1 | ||||||||
Protein Properties | Length: 177aa MW: 20744 Da PI: 10.0375 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 87.2 | 2.4e-27 | 12 | 100 | 2 | 90 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 fY+eYA+++GF +r+ + ++s+r+g+i r++ C+keg+ + + k ++ r++ra+tr gCka++++k +k+gkw++tk++++HnH+l+ Glyma.06G323400.3.p 12 FYDEYARRLGFVMRVMSCRRSERDGRILARRLGCNKEGYCVSIRGKFSSVRKPRASTREGCKAMIHIKYNKSGKWVITKFVKDHNHPLV 100 9**************************************999999989***************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 2.5E-25 | 12 | 100 | IPR004330 | FAR1 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009585 | Biological Process | red, far-red light phototransduction | ||||
GO:0010018 | Biological Process | far-red light signaling pathway | ||||
GO:0042753 | Biological Process | positive regulation of circadian rhythm | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 177 aa Download sequence Send to blast |
MEFESEDAAK IFYDEYARRL GFVMRVMSCR RSERDGRILA RRLGCNKEGY CVSIRGKFSS 60 VRKPRASTRE GCKAMIHIKY NKSGKWVITK FVKDHNHPLV VSPREARQTM DEKDKKIQEL 120 TAELRHKKRL CATYQEQLTS FMKIVEEHNE KLSAKIHHVV NNLKEFESIE ELLHQT* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.7717 | 0.0 | cotyledon| hypocotyl| leaf |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in hypocotyls, rosette and cauline leaves, inflorescences stems, flowers and siliques. {ECO:0000269|PubMed:15591448}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription activator involved in regulating light control of development. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.06G323400.3.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006582815.1 | 1e-128 | protein FAR1-RELATED SEQUENCE 5 isoform X1 | ||||
Refseq | XP_014632376.1 | 1e-128 | protein FAR1-RELATED SEQUENCE 5 isoform X1 | ||||
Refseq | XP_025984822.1 | 1e-128 | protein FAR1-RELATED SEQUENCE 5 isoform X1 | ||||
Refseq | XP_025984823.1 | 1e-128 | protein FAR1-RELATED SEQUENCE 5 isoform X1 | ||||
Refseq | XP_025984824.1 | 1e-129 | protein FAR1-RELATED SEQUENCE 5 isoform X2 | ||||
Swissprot | Q9SZL8 | 4e-23 | FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5 | ||||
TrEMBL | A0A0R0JNX7 | 1e-128 | A0A0R0JNX7_SOYBN; Uncharacterized protein | ||||
TrEMBL | I1KFX4 | 1e-127 | I1KFX4_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA06G48170.4 | 1e-128 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G43280.1 | 1e-104 | FAR1 family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.06G323400.3.p |
Entrez Gene | 100793266 |
Publications ? help Back to Top | |||
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