PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.06G318900.3.p | ||||||||
Common Name | GLYMA_06G318900 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | NAC | ||||||||
Protein Properties | Length: 344aa MW: 39944.6 Da PI: 6.3191 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 179.7 | 7.7e-56 | 7 | 136 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatg 87 +ppGfrFhPtdeelv++yL+kkv+++ ++l +vik+vd+yk+ePwdL++ ++ a e++ewyfFs++dkky+tg+r+nrat++g+Wkatg Glyma.06G318900.3.p 7 VPPGFRFHPTDEELVDYYLRKKVTSRGIDL-DVIKDVDLYKIEPWDLQElcRIGAqEQNEWYFFSHKDKKYPTGTRTNRATAAGFWKATG 95 69****************************.9***************954555442556******************************* PP NAM 88 kdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 +dk+++s k+ l+g++ktLvfykgrap+g+k+dW+mheyrle Glyma.06G318900.3.p 96 RDKAIYS-KHDLIGMRKTLVFYKGRAPNGQKSDWIMHEYRLE 136 *******.8899****************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.02E-61 | 4 | 156 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 60.089 | 7 | 156 | IPR003441 | NAC domain |
Pfam | PF02365 | 6.5E-29 | 8 | 135 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 344 aa Download sequence Send to blast |
MNNFSHVPPG FRFHPTDEEL VDYYLRKKVT SRGIDLDVIK DVDLYKIEPW DLQELCRIGA 60 QEQNEWYFFS HKDKKYPTGT RTNRATAAGF WKATGRDKAI YSKHDLIGMR KTLVFYKGRA 120 PNGQKSDWIM HEYRLETDEN GAPQEEGWVV CRVFKKRLTT MRKLSEHDSP CWYDDQVSFM 180 QDLDSPKQSS QPNLPYQQFQ YSCKKELDLS YHLPVQLPLE NQKLLQSASN SMTPYGIEEN 240 PNAMQPASSM MQQVQQQNFQ AVVFGNNAND QQVTDWRSLD KYVASQLSQE DASKDHNRYS 300 NTGNIFQVKN NSNIEQLRDL DKDEMMPENA STSNSSCPIN MWK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 8e-50 | 6 | 157 | 14 | 169 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Up-regulated during xylem vessel element formation. Expressed preferentially in procambial cells adjacent to root meristem. {ECO:0000269|PubMed:16103214, ECO:0000269|PubMed:25148240}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in root, shoot and hypocotyl vascular elements, columella root caps, epidermal and cortex root cells and root-hypocotyl junctions. Observed predominantly in root imature xylem vessels (PubMed:18445131). Present in root developing xylems (PubMed:16103214, PubMed:17565617). Specifically expressed in vessels in the secondary xylem of the root-hypocotyl region, and in vessels but not in interfascicular fibers in stems (PubMed:25148240). {ECO:0000269|PubMed:16103214, ECO:0000269|PubMed:17565617, ECO:0000269|PubMed:18445131, ECO:0000269|PubMed:25148240}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:16103214, PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:16103214, ECO:0000269|PubMed:25148240}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.06G318900.3.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015040 | 1e-141 | AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003526377.2 | 0.0 | NAC domain-containing protein 7 | ||||
Refseq | XP_028238428.1 | 0.0 | NAC domain-containing protein 7-like | ||||
Swissprot | Q9FWX2 | 1e-134 | NAC7_ARATH; NAC domain-containing protein 7 | ||||
TrEMBL | A0A0R0JVR1 | 0.0 | A0A0R0JVR1_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA06G47680.1 | 0.0 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G12260.1 | 1e-120 | NAC 007 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.06G318900.3.p |
Publications ? help Back to Top | |||
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