PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.06G314300.1.p
Common NameGLYMA_06G314300, LOC100817034
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family FAR1
Protein Properties Length: 843aa    MW: 96166.3 Da    PI: 7.2223
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.06G314300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR185.86.7e-2789191191
                 FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk............tekerrtraetrtgCkaklkvkkekdgkwev 78 
                          +fY+eYA+++GF++ +++s++sk+++e+++++f Cs++g+++e +k+            +e++  +r+ ++t+Cka+++vk+++dgkw++
  Glyma.06G314300.1.p  89 SFYQEYARSMGFNTAIQNSRRSKTSREFIDAKFACSRYGTKREYDKSfnrprarqnkqdSENSTGRRSCSKTDCKASMHVKRRSDGKWVI 178
                          5*******************************************9999***999887665556669999********************* PP

                 FAR1  79 tkleleHnHelap 91 
                          +++++eHnHel p
  Glyma.06G314300.1.p 179 HSFVKEHNHELLP 191
                          **********975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031019.3E-2589191IPR004330FAR1 DNA binding domain
PfamPF105512.2E-29288380IPR018289MULE transposase domain
PROSITE profilePS509669.557568604IPR007527Zinc finger, SWIM-type
PfamPF044345.7E-5576602IPR007527Zinc finger, SWIM-type
SMARTSM005753.7E-6579606IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009585Biological Processred, far-red light phototransduction
GO:0010018Biological Processfar-red light signaling pathway
GO:0042753Biological Processpositive regulation of circadian rhythm
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 843 aa     Download sequence    Send to blast
MDIDLRLPSG EHDKEDEETT TIDNMLDSEE KLHNGGIDGR NIVDAGIEVH ALNGGDLNSP  60
TVDIVMFKED TNLEPLSGME FESHGEAYSF YQEYARSMGF NTAIQNSRRS KTSREFIDAK  120
FACSRYGTKR EYDKSFNRPR ARQNKQDSEN STGRRSCSKT DCKASMHVKR RSDGKWVIHS  180
FVKEHNHELL PAQAVSEQTR RMYAAMARQF AEYKTVVGLK NEKNPFDKGR NLGLESGEAK  240
LMLDFFIQMQ NMNSNFFYAV DLGEDQRLKN LLWIDAKSRH DYINFCDVVS FDTTYVRNKY  300
KMPLAFFVGV NQHYQFTLLG CALISDESAA TFSWLFWTWL KGVGGQVPKV IITDHDKTLK  360
SVISDMFPNS SHCVCLWHIL GKVSENLSPV IKKHENFMAK FEKCIYRSLT SDDFEKRWWK  420
IVDKFELRED ECMQSLYEDR KLWAPTFMKD VFLGGMSTIQ RSESVNSFFD KYVHKKTSVQ  480
DFVKQYEAIL QDRYEEEAKA DSDTWNKVAT LKTPSPLEKS VAGIFTHAVF KKIQAEVIGA  540
VACHPKADRH DDTTIVHRVH DMETNKDFFV VVNQVKSELS CICRLFEYRG YLCRHALIVL  600
QYSGQSVFPS QYILKRWTKD AKVRNIIGEE SEHVLTRVQR YNDLCQRALK LIEEGSLSQE  660
SYGIAFHALH EAHKSCVSVN NSSKSPTEAG TSGAHGQLST EDDTQSRNMS KSNKKKNPTK  720
KKKVNSEAEV ITVGALDNLQ QMDKFSTRAV TLEGYYGTQQ SVQGMLNLMG PTRDDYYGNQ  780
QTLQGLGPIS SIPTSHDGYY GTHQGMPGLA QLDFLRTGFT YGIRDDTNVR ATQLHEDPSR  840
HA*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.589890.0cotyledon| root| stem
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that recognizes and binds to the DNA consensus sequence 5'-CACGCGC-3'. Activates the expression of FHY1 and FHL involved in light responses. When associated with PHYA, protects it from being recognized and degraded by the COP1/SPA complex. Positive regulator of chlorophyll biosynthesis via the activation of HEMB1 gene expression. {ECO:0000269|PubMed:11889039, ECO:0000269|PubMed:12753585, ECO:0000269|PubMed:17012604, ECO:0000269|PubMed:18033885, ECO:0000269|PubMed:18715961, ECO:0000269|PubMed:22634759}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.06G314300.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated after exposure to far-red light. Subject to a negative feedback regulation by PHYA signaling. Up-regulated by white light. {ECO:0000269|PubMed:11889039, ECO:0000269|PubMed:18033885, ECO:0000269|PubMed:22634759}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM5877010.0KM587701.1 Glycine max clone GmFHY3 FHY3 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003527537.10.0protein FAR-RED ELONGATED HYPOCOTYL 3
RefseqXP_028238369.10.0protein FAR-RED ELONGATED HYPOCOTYL 3-like
SwissprotQ9LIE50.0FHY3_ARATH; Protein FAR-RED ELONGATED HYPOCOTYL 3
TrEMBLA0A0B2QY080.0A0A0B2QY08_GLYSO; Protein FAR-RED ELONGATED HYPOCOTYL 3
TrEMBLI1KFM90.0I1KFM9_SOYBN; Uncharacterized protein
STRINGGLYMA06G47210.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF4030530
Representative plantOGRP1057657
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22170.20.0far-red elongated hypocotyls 3
Publications ? help Back to Top
  1. Chang N,Gao Y,Zhao L,Liu X,Gao H
    Arabidopsis FHY3/CPD45 regulates far-red light signaling and chloroplast division in parallel.
    Sci Rep, 2015. 5: p. 9612
    [PMID:25872642]
  2. Wang C, et al.
    SCAB3 Is Required for Reorganization of Actin Filaments during Light Quality Changes.
    J Genet Genomics, 2015. 42(4): p. 161-8
    [PMID:25953354]
  3. Wang W, et al.
    A pair of light signaling factors FHY3 and FAR1 regulates plant immunity by modulating chlorophyll biosynthesis.
    J Integr Plant Biol, 2016. 58(1): p. 91-103
    [PMID:25989254]
  4. Ma L, et al.
    Arabidopsis FHY3 and FAR1 Regulate Light-Induced myo-Inositol Biosynthesis and Oxidative Stress Responses by Transcriptional Activation of MIPS1.
    Mol Plant, 2016. 9(4): p. 541-57
    [PMID:26714049]
  5. Siddiqui H,Khan S,Rhodes BM,Devlin PF
    FHY3 and FAR1 Act Downstream of Light Stable Phytochromes.
    Front Plant Sci, 2016. 7: p. 175
    [PMID:26941752]
  6. Li D, et al.
    FAR-RED ELONGATED HYPOCOTYL3 activates SEPALLATA2 but inhibits CLAVATA3 to regulate meristem determinacy and maintenance in Arabidopsis.
    Proc. Natl. Acad. Sci. U.S.A., 2016. 113(33): p. 9375-80
    [PMID:27469166]
  7. Liu L,Li B,Liu X
    FAR-RED ELONGATED HYPOCOTYL3 promotes floral meristem determinacy in Arabidopsis.
    Plant Signal Behav, 2016. 11(10): p. e1238545
    [PMID:27660915]
  8. Ma L,Xue N,Fu X,Zhang H,Li G
    Arabidopsis thaliana FAR-RED ELONGATED HYPOCOTYLS3 (FHY3) and FAR-RED-IMPAIRED RESPONSE1 (FAR1) modulate starch synthesis in response to light and sugar.
    New Phytol., 2017. 213(4): p. 1682-1696
    [PMID:27859295]
  9. Liu Y, et al.
    Light and Ethylene Coordinately Regulate the Phosphate Starvation Response through Transcriptional Regulation of PHOSPHATE STARVATION RESPONSE1.
    Plant Cell, 2017. 29(9): p. 2269-2284
    [PMID:28842534]
  10. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]