PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.06G311500.1.p
Common NameGLYMA_06G311500, LOC102663393
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C2H2
Protein Properties Length: 304aa    MW: 33341.5 Da    PI: 6.5754
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.06G311500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.10.00014118140123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          ++C+ C+k Fs++  L  H++ H
  Glyma.06G311500.1.p 118 FSCNFCKKEFSSSQALGGHQNAH 140
                          89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576679.79E-7115145No hitNo description
Gene3DG3DSA:3.30.160.604.3E-5116144IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.759118145IPR007087Zinc finger, C2H2
PROSITE patternPS000280120140IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MASSHFLEGC PSEGSSISAT SEGISHKPSA EEEKNHDEVT TMKEKDVKSE QDQASNSNSH  60
MVLDFVKLSK DYSIRGSKVE LDFFNPMSLG GSSSSRTNNN EGRDENNNEE KSSEAKTFSC  120
NFCKKEFSSS QALGGHQNAH KQERALAKRR QGIDAGAFGN PHFLYYPYHP THSFYGSYNR  180
ALGVRMESMI HKPSYPSPSL GFRFGQGWSR SQEMLNPSLD RLRMETLHAN SGTRILGSDN  240
TNLRTQDDRG TIGHNIPFLG ESSTNVVTKS NSAPLSNLGG DHPKQEAPSS PDSSDEIDLS  300
LKL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.06G311500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1984470.0AC198447.7 Glycine max cultivar Williams 82 clone gmw2-48a19, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006582801.10.0zinc finger protein 3
RefseqXP_028237041.10.0zinc finger protein 3-like
TrEMBLA0A0B2R3010.0A0A0B2R301_GLYSO; Zinc finger protein 3
TrEMBLK7KYF20.0K7KYF2_SOYBN; Uncharacterized protein
STRINGGLYMA06G46860.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18223074
Representative plantOGRP8215137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10970.11e-25C2H2 family protein