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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.06G311400.1.p | ||||||||
Common Name | GLYMA_06G311400, LOC100810093 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | NF-YC | ||||||||
Protein Properties | Length: 293aa MW: 32349.9 Da PI: 5.1682 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 61.6 | 1.5e-19 | 6 | 86 | 18 | 98 |
NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 ++++P arikki++adedv +i+ +Pvl+ska elf+ +l r++ + + +t++ ++ +v++ +fdfl div r Glyma.06G311400.1.p 6 DTRFPAARIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCDRTYEVTLQRGAKTMNSLHLKHCVQSYSVFDFLRDIVSR 86 5789**************************************************************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 4.5E-26 | 3 | 72 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 1.31E-20 | 4 | 90 | IPR009072 | Histone-fold |
Pfam | PF00808 | 4.1E-19 | 8 | 71 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 293 aa Download sequence Send to blast |
MRKKLDTRFP AARIKKIMQA DEDVGKIALA VPVLVSKALE LFLQDLCDRT YEVTLQRGAK 60 TMNSLHLKHC VQSYSVFDFL RDIVSRVPDY GHGHGHGHSE AGADDRALPK RRKAVGDDGN 120 DSDEEAKRSK MRELGHTGTP GRGRGRGRGR GRGRGARTIE RDICHQQVES EPCTSILQSS 180 NDIPNTSVPI DNGPQSKELP KENFVISEES TQSFRNIDLN ANLNENEDKN AGTAVPASLP 240 EPTSMDTAME IKHEEIPGWS LSDVDKMGID TMQLANLGSR LEEDEEDYDE EG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1jfi_A | 3e-23 | 2 | 72 | 5 | 75 | Transcription Regulator NC2 alpha chain |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 143 | 153 | RGRGRGRGRGR |
2 | 145 | 154 | RGRGRGRGRG |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.45450 | 0.0 | root| stem |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.06G311400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC198447 | 0.0 | AC198447.7 Glycine max cultivar Williams 82 clone gmw2-48a19, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003527524.1 | 0.0 | dr1-associated corepressor homolog | ||||
Refseq | XP_028238342.1 | 0.0 | dr1-associated corepressor homolog | ||||
TrEMBL | A0A0B2R3F1 | 0.0 | A0A0B2R3F1_GLYSO; Dr1-associated corepressor | ||||
TrEMBL | I1KFK3 | 0.0 | I1KFK3_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA06G46850.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1728 | 34 | 91 | Representative plant | OGRP2179 | 16 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12480.1 | 3e-71 | nuclear factor Y, subunit C11 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.06G311400.1.p |
Entrez Gene | 100810093 |