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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Glyma.06G300400.1.p |
Common Name | GLYMA_06G300400, LOC106799185 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family |
MYB |
Protein Properties |
Length: 243aa MW: 27500.6 Da PI: 6.5077 |
Description |
MYB family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Glyma.06G300400.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Myb_DNA-binding | 47.9 | 3.1e-15 | 15 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
+g WT+eEd +l+ v+ +G ++W+ ++ g+ R++k+c++rw +yl
Glyma.06G300400.1.p 15 KGTWTPEEDWKLIAHVNAHGHKNWRQLPKLAGLARCGKSCRLRWVNYL 62
799*******************************************97 PP
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2 | Myb_DNA-binding | 50.7 | 4e-16 | 68 | 112 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
rg+ T eE+e ++++ + lG++ W+ Ia++++ gR+++++k++w+ +
Glyma.06G300400.1.p 68 RGNYTHEEEETIIKLRTSLGNR-WSVIASHLP-GRSDNEIKNHWHAH 112
899*******************.*********.***********976 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 243 aa
Download sequence Send
to blast |
MVKTPYCDKK SGLKKGTWTP EEDWKLIAHV NAHGHKNWRQ LPKLAGLARC GKSCRLRWVN 60 YLRPGIKRGN YTHEEEETII KLRTSLGNRW SVIASHLPGR SDNEIKNHWH AHLKKRFQHD 120 EASTPKLHLS TVESIQENNY SVEVDPSPFQ NSSPATYDAS PSSHHTSMSD FSSMITEPAS 180 ASSDGNLVID GFADFTEENT DPISAYSWEE LYEISYFSGE FLAPFVTEPQ SFCPVYDVWG 240 LL*
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Expression --
Description ? help
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Source |
Description |
Uniprot | DEVELOPMENTAL STAGE: Fades out in old roots and leaves. {ECO:0000269|PubMed:24415840}. |
Uniprot | TISSUE SPECIFICITY: Expressed in imbibed seeds, hypocotyls, cotyledons, roots, seedlings, siliques and flowers. {ECO:0000269|PubMed:24415840}. |
Functional Description ? help
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Source |
Description |
UniProt | Transcription activator that regulates freezing tolerance by affecting expression of CBF genes. {ECO:0000269|PubMed:24415840}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: Induced by salicylic acid (SA), jasmonic acid (JA), salt (NaCl), ethylene and auxin (IAA) (PubMed:16463103). Down-regulated by cold treatment (PubMed:24415840). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:24415840}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AP015039 | 1e-35 | AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari. |