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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Glyma.06G300200.1.p |
Common Name | GLYMA_06G300200, LOC100777107 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family |
MYB |
Protein Properties |
Length: 325aa MW: 36796.9 Da PI: 5.075 |
Description |
MYB family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Glyma.06G300200.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Myb_DNA-binding | 49.2 | 1.2e-15 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
+g WT+eEd +l+ +v+++G +W+ ++ g+ R++k+c++rw +yl
Glyma.06G300200.1.p 14 KGTWTPEEDMKLIAYVTRYGCWNWRQLPKFAGLARCGKSCRLRWMNYL 61
799*****************99************************97 PP
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2 | Myb_DNA-binding | 56.1 | 8.6e-18 | 67 | 110 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
rg++T++E+e +++ +k+lG++ W++Ia +++ gRt++++k++w++
Glyma.06G300200.1.p 67 RGNFTQQEEECIIRMHKKLGNR-WSAIAVELP-GRTDNEIKNHWHT 110
89********************.*********.***********97 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 325 aa
Download sequence Send
to blast |
MVRTPSCDKS GMRKGTWTPE EDMKLIAYVT RYGCWNWRQL PKFAGLARCG KSCRLRWMNY 60 LRPNIKRGNF TQQEEECIIR MHKKLGNRWS AIAVELPGRT DNEIKNHWHT ALKKRSQQNT 120 LINEETKAIK SKNKESVHNN GVFVTLPATS QISDNSSLSP VSSTCSEFSS ITSDLSTAAS 180 CMENLVFEDD DLGFLDLYNI DPMNGNLWTE LNLDGISFNT PCEIVSGDTN STFQSSSSSN 240 SNTLDSPHQS TSESIVVNND FGRFLDSYEE ATVDNFWTQS YVADMSHVPS ELFVPSVAES 300 EYFTPLYDDL WGQTHLYHEN HCLF*
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Expression --
Description ? help
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Source |
Description |
Uniprot | DEVELOPMENTAL STAGE: Fades out in old roots and leaves. {ECO:0000269|PubMed:24415840}. |
Uniprot | TISSUE SPECIFICITY: Expressed in imbibed seeds, hypocotyls, cotyledons, roots, seedlings, siliques and flowers. {ECO:0000269|PubMed:24415840}. |
Functional Description ? help
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Source |
Description |
UniProt | Transcription activator that regulates freezing tolerance by affecting expression of CBF genes. {ECO:0000269|PubMed:24415840}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: Induced by salicylic acid (SA), jasmonic acid (JA), salt (NaCl), ethylene and auxin (IAA) (PubMed:16463103). Down-regulated by cold treatment (PubMed:24415840). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:24415840}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AC235897 | 1e-60 | AC235897.2 Glycine max clone GM_WBc0123J08, complete sequence. |