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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Glyma.06G300100.1.p |
| Common Name | GLYMA_06G300100, LOC778087 |
| Organism |
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| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
|
| Family |
MYB |
| Protein Properties |
Length: 319aa MW: 36011.9 Da PI: 5.0894 |
| Description |
MYB family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Glyma.06G300100.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Myb_DNA-binding | 48.6 | 1.9e-15 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
+g WT eEd +l+ +v+++G+ +W+ +r g+ R++k+c++rw +yl
Glyma.06G300100.1.p 14 KGTWTLEEDRKLIAYVTRYGSWNWRQLPRFAGLARCGKSCRLRWMNYL 61
799*******************************************97 PP
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| 2 | Myb_DNA-binding | 58.6 | 1.4e-18 | 67 | 111 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
rg++T++E+e +++ +k+lG++ W+tIa++++ gRt++++k++w++
Glyma.06G300100.1.p 67 RGNFTQQEEEFIIRMHKKLGNR-WSTIAAELP-GRTDNEIKNHWHTT 111
89********************.*********.***********986 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 319 aa
Download sequence Send
to blast |
MVRTPSCDKS GMRKGTWTLE EDRKLIAYVT RYGSWNWRQL PRFAGLARCG KSCRLRWMNY 60
LRPDVKRGNF TQQEEEFIIR MHKKLGNRWS TIAAELPGRT DNEIKNHWHT TLKKRSQQNT 120
LTKEEARASK SKDKVLPNKG VTVTLPATSS QISDNSSLSP ASSTSSEFSN ITSDPSTAAS 180
MQNLVFEDDD EFGFLDSYID PMNNESFWKE LTLDDISFNN VPIVSEDTNG CFQSTSSSNS 240
NTLDSLHKST SESIVADNDF GGFFDAYAEA TVDNFWTQPY VAGMSSHVPT ELLAPSVAES 300
EYFTPIYDDL WGQTHLYY*
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| Expression --
Description ? help
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| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: Fades out in old roots and leaves. {ECO:0000269|PubMed:24415840}. |
| Uniprot | TISSUE SPECIFICITY: Expressed in imbibed seeds, hypocotyls, cotyledons, roots, seedlings, siliques and flowers. {ECO:0000269|PubMed:24415840}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription activator that regulates freezing tolerance by affecting expression of CBF genes. {ECO:0000269|PubMed:24415840}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Induced by salicylic acid (SA), jasmonic acid (JA), salt (NaCl), ethylene and auxin (IAA) (PubMed:16463103). Down-regulated by cold treatment (PubMed:24415840). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:24415840}. |
