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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Glyma.06G300000.1.p |
| Common Name | GLYMA_06G300000, LOC100776043 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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| Family |
MYB |
| Protein Properties |
Length: 161aa MW: 18795 Da PI: 10.6843 |
| Description |
MYB family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Glyma.06G300000.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Myb_DNA-binding | 53 | 8.1e-17 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
+g+W+ eEde+l +vk++G +W+ ++ g+ R++k+c++rw++yl
Glyma.06G300000.1.p 14 KGAWSREEDEKLTAYVKRHGHSNWRQLPKFAGLARCGKSCRLRWLNYL 61
79********************************************97 PP
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| 2 | Myb_DNA-binding | 53.6 | 5.2e-17 | 68 | 111 | 2 | 47 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
g+ T eE+++++++++++G++ W++Ia++++ gRt++++k++w+ +
Glyma.06G300000.1.p 68 GNYTLEEEKIIIKLHQEFGNK-WSLIAEKLP-GRTDNEVKNYWHGH 111
789******************.*********.***********966 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 161 aa
Download sequence Send
to blast |
MVRAPFYDKN GLKKGAWSRE EDEKLTAYVK RHGHSNWRQL PKFAGLARCG KSCRLRWLNY 60
LRPNLKHGNY TLEEEKIIIK LHQEFGNKWS LIAEKLPGRT DNEVKNYWHG HLKKIKSNEI 120
TTSKLKSKPG YSIEVNQMRL INVKNLKALM LMLVMTSLIF *
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| Expression --
Description ? help
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| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: In nonelongating internodes, highly expressed in interfascicular fibers and xylem cells but not in parenchymatous pith cells. In elongating internodes, predominantly expressed in protoxylem vessels. {ECO:0000269|PubMed:19122102}. |
| Uniprot | TISSUE SPECIFICITY: Expressed in leaves (PubMed:9839469). Specifically expressed in fibers and vessels undergoing secondary wall thickening, especially in inflorescence stems (PubMed:19122102). {ECO:0000269|PubMed:19122102, ECO:0000269|PubMed:9839469}. |
| Uniprot | TISSUE SPECIFICITY: Highly expressed in roots and at lower levels in stems, flowers and siliques. {ECO:0000269|PubMed:24902892}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor. {ECO:0000250|UniProtKB:Q9M2D9}. |
| UniProt | Transcriptional activator that binds DNA to the AC cis-elements 5'-ACCTACC-3', 5'-ACCAACC-3' and 5'-ACCTAAC-3' of promoters and specifically activates lignin biosynthetic genes during secondary wall formation mediated by SND1. {ECO:0000269|PubMed:19122102}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Induced by gravity in roots. {ECO:0000269|PubMed:24902892}. |
| UniProt | INDUCTION: Slightly induced by light (PubMed:9839469). Regulated by the SND1 close homologs NST1, NST2, VND6, and VND7 and their downstream targets MYB46 and MYB83 (PubMed:19122102, PubMed:22197883). {ECO:0000269|PubMed:19122102, ECO:0000269|PubMed:22197883, ECO:0000269|PubMed:9839469}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AP015039 | 4e-59 | AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari. |
| Publications
? help Back to Top |
- Duarte JM, et al.
Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
Mol. Biol. Evol., 2006. 23(2): p. 469-78
[PMID:16280546] - Fernández-Pérez F,Vivar T,Pomar F,Pedreño MA,Novo-Uzal E
Peroxidase 4 is involved in syringyl lignin formation in Arabidopsis thaliana.
J. Plant Physiol., 2015. 175: p. 86-94
[PMID:25506770] - Noda S, et al.
The expression of a rice secondary wall-specific cellulose synthase gene, OsCesA7, is directly regulated by a rice transcription factor, OsMYB58/63.
Planta, 2015. 242(3): p. 589-600
[PMID:26070439] - Takeuchi M,Kegasa T,Watanabe A,Tamura M,Tsutsumi Y
Expression analysis of transporter genes for screening candidate monolignol transporters using Arabidopsis thaliana cell suspensions during tracheary element differentiation.
J. Plant Res., 2018. 131(2): p. 297-305
[PMID:28921082]
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