PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.06G295300.1.p
Common NameGLYMA_06G295300
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ERF
Protein Properties Length: 404aa    MW: 45815.8 Da    PI: 5.9638
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.06G295300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.53.9e-19207257256
                  AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                           y+GVr+++ +g+WvAeIr p++   r+r +lg+f+tae+Aa a+++ + kl+ge
  Glyma.06G295300.1.p 207 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEDAAMAYDREAFKLRGE 257
                          59******9.**********955...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.58E-33206266No hitNo description
SuperFamilySSF541719.81E-23207265IPR016177DNA-binding domain
PROSITE profilePS5103223.024207264IPR001471AP2/ERF domain
SMARTSM003802.7E-40207270IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.1E-32207265IPR001471AP2/ERF domain
PfamPF008472.3E-12208257IPR001471AP2/ERF domain
PRINTSPR003676.6E-11208219IPR001471AP2/ERF domain
PRINTSPR003676.6E-11230246IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 404 aa     Download sequence    Send to blast
MANNREKSTK EGVEETHHHK VIGESEGQDW EIEKGKGLDL SSGRRQWKPV FDDASLSHRP  60
LKKIRSPERE NPNQQQQQPP SSMLSLQPPS SRIVFPFAFE GSQHPMPFPH PFGTTNLPLF  120
RPNLHPTQQM ISFGSQQNMG YPPFLAPEST MPHQHQQHLQ QHHQQLLHYW SDAINLSPRG  180
RMMMMMNRTE GRQMLRPQAQ PLNATKLYRG VRQRHWGKWV AEIRLPRNRT RLWLGTFDTA  240
EDAAMAYDRE AFKLRGENAK LNFPELFLNK DKAEQSTTVA PASSSNEGST STSSQNTKQP  300
EPIPEEINTE SEDIPPTETI AEENAETGKG ISQPQELVWG EWFNAIPAGW GPGSPVWDDL  360
DPNNNLLLHS QLPFVNPNQQ EFHDDAGASS QIQQEDNSTE PDV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A7e-21206264160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.06G295300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150390.0AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014632295.10.0ethylene-responsive transcription factor ERF054
TrEMBLA0A0R0JN350.0A0A0R0JN35_SOYBN; Uncharacterized protein
STRINGGLYMA06G45010.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42683258
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20880.17e-57ERF family protein