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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Glyma.06G290100.1.p |
Common Name | GLYMA_06G290100, LOC100800123 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family |
C3H |
Protein Properties |
Length: 352aa MW: 39444.9 Da PI: 7.8149 |
Description |
C3H family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Glyma.06G290100.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | zf-CCCH | 24 | 7e-08 | 122 | 142 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26
C+ f+r G+C +Gd C F+Hg
Glyma.06G290100.1.p 122 VCPEFRR-GQCDRGDACEFSHG 142
7******.*************9 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 352 aa
Download sequence Send
to blast |
MSSVFSEHKF QLQPSHQLLS LKKSLGDIDI PVPPRKLLTR RSAAVHDGSG DIYLPHSGST 60 DSSTDDDSDG DPYASDQFRM FEFKVRRCSR SRSHDWTDCP FVHPGEKARR RDPRRFYYSG 120 TVCPEFRRGQ CDRGDACEFS HGVFECWLHP SRYRTEACKD GKNCKRKVCF FAHTPRQLRV 180 FHSNDNSNKK KCTDISPHNN NNCCLVCHCS NSTRSPTSTL FGMSHFSPPL SPPSPSSPSM 240 FETNNHHHGV VKYNKDVFSE LVCSMEGLNF DEASSLLSAA SKPHHHNNLS SWLDVSKDHN 300 QKQFNTLNSP TITACGSFSN NGNGGFLRAE NGVVVDDVIA PDLAWVNELL M*
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Expression --
Description ? help
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Source |
Description |
Uniprot | TISSUE SPECIFICITY: Specifically expressed in seeds. {ECO:0000269|PubMed:18487351}. |
Functional Description ? help
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Source |
Description |
UniProt | Probable transcription repressor that functions as negative regulator of phytochrome-mediated promotion of seed germination. Inhibits seed germination by regulating the expression of gibberellic acid (GA) and abscisic acid (ABA) metabolic genes. Does not regulate the expression of the DELLA genes RGA and RGA1. Activated by PIL5, a phytochrome-interacting basic helix-loop-helix transcription factor. {ECO:0000269|PubMed:18487351}. |
Function -- GeneRIF ? help
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- GmZF351, encoding a tandem CCCH zinc finger protein GLYMA06G44440 (Glyma.06g290100), may have potential in the improvement of oil production in soybean and other related crops.
[PMID: 28184009]
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | KT031154 | 0.0 | KT031154.1 Glycine max clone HN_CCL_145 C3H-type 1 Zn transcription factor (Glyma12g13300.1) mRNA, partial cds. |