PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.06G288900.1.p
Common NameGLYMA_06G288900, LOC100797480
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family HB-other
Protein Properties Length: 1782aa    MW: 200244 Da    PI: 5.7342
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.06G288900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox54.52e-171974156
                         TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
             Homeobox  1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                         ++kR   t++qle+Le++++ + yps++ r+eL+ kl+L++rq ++WF+ rR k++
  Glyma.06G288900.1.p 19 KSKRKMKTASQLEVLEKAYAAEAYPSEALRAELSVKLSLSDRQLQMWFCHRRLKDR 74
                         679***************************************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.5E-17475IPR009057Homeodomain-like
SuperFamilySSF466891.45E-141577IPR009057Homeodomain-like
PROSITE profilePS5007116.0341676IPR001356Homeobox domain
SMARTSM003897.8E-161880IPR001356Homeobox domain
PfamPF000465.9E-151974IPR001356Homeobox domain
CDDcd000861.47E-121977No hitNo description
SMARTSM005711.2E-21557616IPR018501DDT domain
PROSITE profilePS5082716.592557616IPR018501DDT domain
PfamPF027911.0E-16558613IPR018501DDT domain
PfamPF050667.5E-15739806IPR007759HB1/Asxl, restriction endonuclease HTH domain
PfamPF156124.7E-8951993IPR028942WHIM1 domain
PfamPF156134.4E-1311341205IPR028941WHIM2 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1782 aa     Download sequence    Send to blast
MEGVSEGEKK KEPVEGENKS KRKMKTASQL EVLEKAYAAE AYPSEALRAE LSVKLSLSDR  60
QLQMWFCHRR LKDRNAKKLQ NDSSLAGAPA VGEEGVEQVT GADVGRDCGL ASGPFDHLDS  120
RKIVPRPGMT AFPSMGAGLP AVVGSSYYEP PQNMDVLQVV AFVERQLGEP IREDGPILGM  180
EFDSLPPDAF GAPIGIVTMG QHRQCGGPFE AKIYEQLDKD VSRTLHEYQF IPEKPSVRNE  240
TYERVAPSIH YSSLDGIPHS RTLLSSGRSF LNGNESAPYG YGIQGHLPGL NLLSRQGRQN  300
HLLPSASGEN DGIPRKNPFV DVTADIHNGA HPITLIDSPL MPSDGRVIHV EELSRLQRKR  360
KNDDTKMQQE LEAQERKNRK ELEKQDILRQ KREEQTKKEM ERHERERQKE EERLLRERQK  420
EEERLLRERQ REEERYQREQ RREQERRQKF LQKESIRAEK LRQKEELRRE KEAARIKAAN  480
ERAIARRIAK ESIELIEDER LELMELAASK KELSSILALD YETIQNLEFY RDGRASFPPK  540
SVQLKRIFSI KPWSDSDENV GNLLMVWRFL ITFADVLGIW PFTVDELIQA FHDHDPRLLG  600
EIHIALLKSI IKDIEDVART PSTGLGCNQH SVTNSGGGHP QVVEGAYLWG FDIRNWQRHL  660
NPLTWPEILR QFALSAGFGP QLKKLSIEQV HPCNNNEGND GRDIISNLRS GAAVENAVAI  720
MQEKGLSNPR RSRHCLTPGT VKFAAFHVLS LEGSKGLNIL EVADKIQKSG LRDLTTSKTP  780
EASISAALSR DTKLFERTAP STYCVRPAYR KDPADSEAIY SGARERIRMF KSGFVEAEAA  840
DNGERDEDSE SDMEEDPEID DLGTETNAKK ESSNYEGFNA DSEMRNRKDS VEVLQTHDTS  900
LEKVGEDLAS IVAKDFNEHK DVSTSSGIAV CNNDVVDPNV KGIAVDESIP GEPWIQGLTE  960
GEYSDLSVVE RLHALVALIG VATEGNSIRV VLEERLEAAN ALKKQMWAEA QLDKRRIKED  1020
YFAKMQSVSY LDKTNELTVV FPSADSKHSP VLIADDKNSK ALLNSHDLHE QSIELQENQN  1080
HLQSSPLKVN KQMQDCSTGP DNYSFQHSGY VVEKSRSNLK SYIGHLAEQT YMYRSLPLGL  1140
DRRRNRYWQF TTSAQNDPGC GRIFVELNDG RWKLIDSEEG FDALLASLDV RGIRESHLHM  1200
MLQRIETYFK EFVRKNAQNV NMRMQNGDPV ERLKTESVEM ASNQDCSANI HGSSSVCIDN  1260
LDASETSTSF VVQLGRNEAD NKDACMRYWD FEKWMRKECL NFSVLSAMKF GKKWCHQLQS  1320
ICDLCLHAYF SGGAPCSSCC RTFSACKSNP SSSKHIVHSE GKVKIDIDCF HASSSLSLRI  1380
RLLKILLSIV EVTLPLEALQ PLWRDSCRKS WSTKLDASSS SEDLLQILTA LEGAIKREYL  1440
DSNYETTFEL LGLFSASGCH TKDSIDGERM SVLPWVPYTS AAVALRLLQL DACIFYTSQQ  1500
KLESEKDKKI GIVMKLPSKH ASARKSYNAG AIETSHQAER AVENWVDLGA GLTSCSRGQR  1560
TQQGRGRSHG GRTSSKRRVV SSRSGSKKRS TTSRSRKMGK LLEWKGRPCR QGGNARGPRS  1620
IRSWQKSEAK VDVITGERDT PKDVMEEAAG IFVQEEINEG EMEAAALNAS SSERSGYEDD  1680
VYQEIGDEYD YLVDNNDGYQ GVFSGKSENL LHGSHYNVVG KEDMDIDDNV DDDDDDNGKI  1740
DLDVEGYIIG GNSDARDRKE ENAEQNMDLD GVGSTSSDYS D*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.421820.0cotyledon
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.06G288900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2352111e-178AC235211.1 Glycine max strain Williams 82 clone GM_WBb0019L21, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006582300.10.0homeobox-DDT domain protein RLT2 isoform X1
RefseqXP_028238082.10.0homeobox-DDT domain protein RLT2-like isoform X1
TrEMBLK7KY040.0K7KY04_SOYBN; Uncharacterized protein
STRINGGLYMA06G44290.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF25233369
Representative plantOGRP15771634
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44180.10.0Homeodomain-like transcriptional regulator