PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.06G288500.3.p
Common NameGLYMA_06G288500, LOC100795895
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family NAC
Protein Properties Length: 286aa    MW: 32385.4 Da    PI: 8.3792
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.06G288500.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM104.71.2e-32491891128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkklelee.......vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk... 79 
                          lp+G++F+Ptd+e++ e+L++kv+++ ++l+        +++   +i++++P++Lp  v+++    +fF++ +k+y+tg+rk+r+++   
  Glyma.06G288500.3.p  49 LPAGVKFDPTDQEIL-EHLEAKVRSDIHKLHPlidefipTLEGEnGICYTHPEKLP-GVSKDGLIRHFFHRPSKAYTTGTRKRRKVHsde 136
                          799***********9.99*****99984443333333222333336**********.555555677******************855455 PP

                  NAM  80 ...sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                             + +W++tgk+++v++   +l+g kk+Lv+y   g+++k+ekt+Wvmh+y+l
  Glyma.06G288500.3.p 137 dgsETRWHKTGKTRPVYN-IAKLKGYKKILVLYtnYGKQRKPEKTNWVMHQYHL 189
                          555778************.8999**********6657999999*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.72E-3644208IPR003441NAC domain
PROSITE profilePS5100532.7449208IPR003441NAC domain
PfamPF023651.5E-1550189IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MTQCSDSENN HHNIIVEGRK DSLIRTCPTC GHHIKCQEQG GGIHDLPGLP AGVKFDPTDQ  60
EILEHLEAKV RSDIHKLHPL IDEFIPTLEG ENGICYTHPE KLPGVSKDGL IRHFFHRPSK  120
AYTTGTRKRR KVHSDEDGSE TRWHKTGKTR PVYNIAKLKG YKKILVLYTN YGKQRKPEKT  180
NWVMHQYHLG SDEEEKEGEL VVSKVFYQTQ PRQCGSLMKD SSVPPGKHMK GQSVHVEVMN  240
NNKNSNNNGY VEYYHSSNFI SFDQGGQNAQ VISHFPVHEG APFIP*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in protoxylem and elongating interfascicular fiber cells of elongating internodes, developing metaxylem cells and interfascicular fibers of non-elongating internodes and developing secondary xylem of roots. {ECO:0000269|PubMed:18952777}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:22133261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.06G288500.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2351020.0AC235102.1 Glycine max strain Williams 82 clone GM_WBa0006K18, complete sequence.
GenBankAC2351650.0AC235165.1 Glycine max strain Williams 82 clone GM_WBa0104E24, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003526260.10.0NAC domain-containing protein 73
RefseqXP_028238079.10.0NAC domain-containing protein 73-like
SwissprotO494591e-117NAC73_ARATH; NAC domain-containing protein 73
TrEMBLA0A445KFG10.0A0A445KFG1_GLYSO; NAC domain-containing protein 73
TrEMBLK7KY030.0K7KY03_SOYBN; Uncharacterized protein
STRINGGLYMA06G44250.20.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28500.11e-119NAC domain containing protein 73
Publications ? help Back to Top
  1. Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE
    CressExpress: a tool for large-scale mining of expression data from Arabidopsis.
    Plant Physiol., 2008. 147(3): p. 1004-16
    [PMID:18467456]
  2. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]
  3. Jervis J, et al.
    A metabolomic assessment of NAC154 transcription factor overexpression in field grown poplar stem wood.
    Phytochemistry, 2015. 115: p. 112-20
    [PMID:25771508]