![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Glyma.06G285800.2.p | ||||||||
Common Name | GLYMA_06G285800, LOC100792210 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
|
||||||||
Family | VOZ | ||||||||
Protein Properties | Length: 392aa MW: 44266.4 Da PI: 5.4458 | ||||||||
Description | VOZ family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | VOZ | 434.7 | 1.2e-133 | 148 | 364 | 1 | 217 |
VOZ 1 pppsaflgpkcalwdctrpaqgsewlqdycssfhatlalneglpgttpvlrpkgidlkdgllfaalsakvqgkevgipecegaatakspw 90 pppsafl+pkcalwdc+rpaqg+ew+q+ycss+h+ la neglpg+tp+lrp+gi++kdg+lfaa+ ak+qgkevgip+cegaa++kspw Glyma.06G285800.2.p 148 PPPSAFLAPKCALWDCFRPAQGVEWCQNYCSSCHELLANNEGLPGMTPILRPWGIGVKDGPLFAAVLAKTQGKEVGIPSCEGAASTKSPW 237 89**************************************************************************************** PP VOZ 91 naaelfdlsllegetirewlffdkprrafesgnrkqrslpdysgrgwhesrkqvmkefgglkrsyymdpqpsssfewhlyeyeineldal 180 na+e+fdls+leget+rewlffdkprrafesgnrkqrslpdysgrgwhesrkqvmke+gg+krsyymdpqp+s++ewhlyeyein++d + Glyma.06G285800.2.p 238 NAPEFFDLSFLEGETVREWLFFDKPRRAFESGNRKQRSLPDYSGRGWHESRKQVMKEHGGQKRSYYMDPQPLSYLEWHLYEYEINNQDGC 327 ****************************************************************************************** PP VOZ 181 alyrlelklvdekksakgkvskdsladlqkklgrlta 217 alyrlelklvd+kks+kgkv+k+sl+dlq+k+g+lta Glyma.06G285800.2.p 328 ALYRLELKLVDKKKSPKGKVTKESLTDLQNKMGQLTA 364 ***********************************97 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 392 aa Download sequence Send to blast |
MLLGTEEKDD ATSPLTKPVP LKNEILTNNI SDINFQYFQE KHFNDNQPLG HTFEGSASTL 60 YNNAYNSSYM TQLDYHPFTL NQDMGHNSNL LGQFDLYHDL RHNTEMKNNS ESTQFSLEGF 120 DCSQFFEADD NVQHGENIIP NILPNICPPP SAFLAPKCAL WDCFRPAQGV EWCQNYCSSC 180 HELLANNEGL PGMTPILRPW GIGVKDGPLF AAVLAKTQGK EVGIPSCEGA ASTKSPWNAP 240 EFFDLSFLEG ETVREWLFFD KPRRAFESGN RKQRSLPDYS GRGWHESRKQ VMKEHGGQKR 300 SYYMDPQPLS YLEWHLYEYE INNQDGCALY RLELKLVDKK KSPKGKVTKE SLTDLQNKMG 360 QLTAAVPSTD DGQPVKGKTK AKSENDESPN K* |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Gma.30563 | 0.0 | leaf |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Ubiquitous. Expressed in the vascular bundles of various tissues, specifically in the phloem. {ECO:0000269|PubMed:15295067, ECO:0000269|PubMed:22904146}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional activator acting positively in the phytochrome B signaling pathway. Functions redundantly with VOZ2 to promote flowering downstream of phytochrome B (phyB). Down-regulates 'FLOWERING LOCUS C' (FLC) and up-regulates 'FLOWERING LOCUS T' (FT). Binds to the 38-bp cis-acting region of the AVP1 gene. Interacts with phyB in the cytoplasm and is translocated to the nucleus at signal transmission, where it is subjected to degradation in a phytochrome-dependent manner. {ECO:0000269|PubMed:15295067, ECO:0000269|PubMed:22904146}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Glyma.06G285800.2.p |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By far-red light. {ECO:0000269|PubMed:22904146}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AP015039 | 0.0 | AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_003527403.1 | 0.0 | transcription factor VOZ1 | ||||
Refseq | XP_006582297.1 | 0.0 | transcription factor VOZ1 | ||||
Swissprot | Q9SGQ0 | 1e-125 | VOZ1_ARATH; Transcription factor VOZ1 | ||||
TrEMBL | K7KXY5 | 0.0 | K7KXY5_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA06G43890.3 | 0.0 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G28520.2 | 1e-119 | vascular plant one zinc finger protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Glyma.06G285800.2.p |
Entrez Gene | 100792210 |
Publications ? help Back to Top | |||
---|---|---|---|
|