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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Glyma.06G249100.1.p |
Common Name | GLYMA_06G249100, SNAC41 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family |
NAC |
Protein Properties |
Length: 369aa MW: 40939.2 Da PI: 6.7434 |
Description |
NAC family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Glyma.06G249100.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | NAM | 172.4 | 1.3e-53 | 18 | 143 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90
lppGfrFhPtdeelvv+yLkkkv++ +l++ ++i++vd+yk++Pw+Lp++++ + +ewyfFs+r++ky++g r+nra++sgyWkatg+dk
Glyma.06G249100.1.p 18 LPPGFRFHPTDEELVVHYLKKKVDSVPLPV-SIIADVDLYKFDPWELPAMASFGAEEWYFFSPRERKYPNGARPNRAATSGYWKATGTDK 106
79****************************.89***************88788999********************************** PP
NAM 91 evlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
+++s ++++vg+kk+Lvfy g+ pkg+ktdW+mheyr+
Glyma.06G249100.1.p 107 PICS-GTQKVGVKKSLVFYGGKPPKGVKTDWIMHEYRV 143
****.999****************************97 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 369 aa
Download sequence Send
to blast |
MESTEDSSTS SQQQQPNLPP GFRFHPTDEE LVVHYLKKKV DSVPLPVSII ADVDLYKFDP 60 WELPAMASFG AEEWYFFSPR ERKYPNGARP NRAATSGYWK ATGTDKPICS GTQKVGVKKS 120 LVFYGGKPPK GVKTDWIMHE YRVAENKPNN RPPGCDLGHK KNSLRLDDWV LCRIYKKGNT 180 QRSHERDDSM DDMIGEVPPS INVGHMNARF HLSKMSTSYS GALLENDRNT LEGVVIGNGN 240 VNGINTNSIN AISSSSSHHQ FASSNSKAEL LPFAPSNNNT SNSASKRTLS SLYWNVDDDN 300 DDDDHKHFNL DSNGNVSVLR TEENNNNTNG TSGSFATLLN QLPQTPSLPQ IDGLLRTPYQ 360 IQGTNWYG*
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Expression --
Description ? help
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Source |
Description |
Uniprot | DEVELOPMENTAL STAGE: Expressed throughout anthers from stages 8 to 12. Later confined to distal region of anthers from stage 13. {ECO:0000269|PubMed:16055634}. |
Uniprot | TISSUE SPECIFICITY: Stamen specific, in anthers from stage 8 (PubMed:15100403, PubMed:16055634). Expressed in the outer integument, but seems not expressed in the embryo at the torpedo stage (PubMed:18849494). {ECO:0000269|PubMed:15100403, ECO:0000269|PubMed:16055634, ECO:0000269|PubMed:18849494}. |
Functional Description ? help
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Source |
Description |
UniProt | Transcription factor of the NAC family (Probable). Together with NAC018/NARS2, regulates embryogenesis by regulating the development and degeneration of ovule integuments, a process required for intertissue communication between the embryo and the maternal integument (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000305}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: By Jasmonic acid (JA). {ECO:0000269|PubMed:16805732}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | KF657306 | 0.0 | KF657306.1 Glycine max NAC transcription factor (SNAC41) mRNA, complete cds. |