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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Glyma.06G248900.1.p |
| Common Name | GLYMA_06G248900, Glyma06g38410.1, SNAC23 |
| Organism |
|
| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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| Family |
NAC |
| Protein Properties |
Length: 338aa MW: 37897.8 Da PI: 6.9365 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Glyma.06G248900.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 166.5 | 9e-52 | 14 | 139 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90
lppGfrF Ptdeel+v+yL++kv+g++++l +i+evd+yk++Pw Lp k+ +ekewyfFs+rd+ky++g+r+nr++ sgyWkatg+dk
Glyma.06G248900.1.p 14 LPPGFRFYPTDEELLVQYLCRKVAGHHFSL-PIIAEVDLYKFDPWVLPGKAVFGEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDK 102
79**************************99.88***************7777899*********************************** PP
NAM 91 evlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
+++ +g++vg+kk Lvfy g+apkg+kt+W+mheyrl
Glyma.06G248900.1.p 103 IITT-EGRKVGIKKALVFYIGKAPKGSKTNWIMHEYRL 139
9999.999****************************97 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 338 aa
Download sequence Send
to blast |
MGVPERDPLA QLSLPPGFRF YPTDEELLVQ YLCRKVAGHH FSLPIIAEVD LYKFDPWVLP 60
GKAVFGEKEW YFFSPRDRKY PNGSRPNRVA GSGYWKATGT DKIITTEGRK VGIKKALVFY 120
IGKAPKGSKT NWIMHEYRLL DSSRKHNLGT AKLDDWVLCR IYKKNSSSQK VEANFLAMEC 180
SNGSSPSSSS HVDDMLGSLP EINDRCFTLP RVNSLRTMHQ QDEKFGSPNM GSGFFSDWVN 240
STDLDSISEF ESGCQTQRMV NYDCNDFFVP SLPPLGHVDY MVDAPLEEEV QSGVRTRRVD 300
GPGHFQPNPD TRLLPGSGDP FGFGFIMGQQ VGFGVRE*
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| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1ut4_A | 1e-104 | 1 | 170 | 4 | 171 | NO APICAL MERISTEM PROTEIN |
| 1ut4_B | 1e-104 | 1 | 170 | 4 | 171 | NO APICAL MERISTEM PROTEIN |
| 1ut7_A | 1e-104 | 1 | 170 | 4 | 171 | NO APICAL MERISTEM PROTEIN |
| 1ut7_B | 1e-104 | 1 | 170 | 4 | 171 | NO APICAL MERISTEM PROTEIN |
| 3swm_A | 1e-104 | 1 | 170 | 7 | 174 | NAC domain-containing protein 19 |
| 3swm_B | 1e-104 | 1 | 170 | 7 | 174 | NAC domain-containing protein 19 |
| 3swm_C | 1e-104 | 1 | 170 | 7 | 174 | NAC domain-containing protein 19 |
| 3swm_D | 1e-104 | 1 | 170 | 7 | 174 | NAC domain-containing protein 19 |
| 3swp_A | 1e-104 | 1 | 170 | 7 | 174 | NAC domain-containing protein 19 |
| 3swp_B | 1e-104 | 1 | 170 | 7 | 174 | NAC domain-containing protein 19 |
| 3swp_C | 1e-104 | 1 | 170 | 7 | 174 | NAC domain-containing protein 19 |
| 3swp_D | 1e-104 | 1 | 170 | 7 | 174 | NAC domain-containing protein 19 |
| 4dul_A | 1e-104 | 1 | 170 | 4 | 171 | NAC domain-containing protein 19 |
| 4dul_B | 1e-104 | 1 | 170 | 4 | 171 | NAC domain-containing protein 19 |
| Search in ModeBase |
| Expression --
Description ? help
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| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Expressed in guard cells of the epidermis. {ECO:0000269|PubMed:25005917}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor that acts downstream of MYC2 in the jasmonate-mediated response to Botrytis cinerea infection (PubMed:28733419). With MYC2 forms a transcription module that regulates wounding-responsive genes (PubMed:28733419). Involved in jasmonate- and coronatine-mediated stomatal reopening in response to Pseudomonas syringae pv tomato DC3000 infection (PubMed:25005917). Regulates the expression of threonine deaminase 2 (TD2) through promoter binding (PubMed:28733419). {ECO:0000269|PubMed:25005917, ECO:0000269|PubMed:28733419}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Induced by jasmonate (JA) (PubMed:25005917, PubMed:28733419, PubMed:30610166). Induced by wounding (PubMed:28733419, PubMed:25005917). Induced by infection with the fungal pathogen Botrytis cinerea (PubMed:28733419). Induced by coronatine (PubMed:25005917). {ECO:0000269|PubMed:25005917, ECO:0000269|PubMed:28733419, ECO:0000269|PubMed:30610166}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | KF657304 | 0.0 | KF657304.1 Glycine max NAC transcription factor (SNAC23) mRNA, complete cds. |
