PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.06G247000.1.p | ||||||||
Common Name | GLYMA_06G247000 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | FAR1 | ||||||||
Protein Properties | Length: 219aa MW: 24758.2 Da PI: 6.3484 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 38 | 5.3e-12 | 60 | 149 | 1 | 89 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.....tekerrtraetrtgCkaklkvkkek.dgkwevtklele 84 +fYn++Ak+ GF +r+++sk + ++ f C + k ++ +k +++r+ + +t+C+a+l++++ + ++w++++++++ Glyma.06G247000.1.p 60 EFYNSFAKKNGFGIRIQSSKPK-----MVFLIFFCEGQHKVKSLVDKdthdnICQSKRNCLTLQTSCQASLTISRGDiASNWVIKSFSND 144 6****************98887.....788899999888877665555666567788889999*************************** PP FAR1 85 HnHel 89 nH + Glyma.06G247000.1.p 145 DNHVM 149 ***87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 6.7E-10 | 60 | 149 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 219 aa Download sequence Send to blast |
MADTLSNIET QEIESINVMP MDTPISFEEV MPGDASNDAE EMNIQPCLGL EFESLEKVIE 60 FYNSFAKKNG FGIRIQSSKP KMVFLIFFCE GQHKVKSLVD KDTHDNICQS KRNCLTLQTS 120 CQASLTISRG DIASNWVIKS FSNDDNHVML NPKSVCYMRC HKKMSVPAQS LVEKFEEEGL 180 PTRKVASIFN NGDSSFSNKD CWNHIRNLRR KNLDIGRC* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.06G247000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024634520.1 | 2e-68 | protein FAR1-RELATED SEQUENCE 5-like | ||||
Refseq | XP_024634767.1 | 3e-70 | protein FAR1-RELATED SEQUENCE 5-like | ||||
Refseq | XP_024642156.1 | 3e-70 | protein FAR1-RELATED SEQUENCE 5-like | ||||
Refseq | XP_024642172.1 | 1e-71 | protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | A0A0R0JTK1 | 1e-161 | A0A0R0JTK1_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA15G20510.2 | 1e-115 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF15798 | 3 | 5 | Representative plant | OGRP30 | 12 | 351 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 4e-20 | FAR1-related sequence 5 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.06G247000.1.p |