PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

ERF

Protein Properties

Length: 184aa MW: 19856.4 Da PI: 10.0564

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.06G236400.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	65	1.5e-20	26	75	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr ++ +gr++AeIrdp gk++r++lg+f+taeeAa+a++ a+++++g Glyma.06G236400.1.p 26 RYRGVRKRP-WGRYAAEIRDP---GKKTRVWLGTFDTAEEAARAYDTAAREFRG 75 59*****.******8...557**********************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51032	24.513	26	83	IPR001471	AP2/ERF domain
CDD	cd00018	4.15E-30	26	85	No hit	No description
Pfam	PF00847	5.1E-14	26	75	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	1.1E-32	26	84	IPR001471	AP2/ERF domain
SMART	SM00380	3.2E-38	26	89	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	6.34E-23	26	84	IPR016177	DNA-binding domain
PRINTS	PR00367	7.7E-12	27	38	IPR001471	AP2/ERF domain
PRINTS	PR00367	7.7E-12	49	65	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009723	Biological Process	response to ethylene
GO:0009737	Biological Process	response to abscisic acid
GO:0009864	Biological Process	induced systemic resistance, jasmonic acid mediated signaling pathway
GO:0010200	Biological Process	response to chitin
GO:0045892	Biological Process	negative regulation of transcription, DNA-templated
GO:0016604	Cellular Component	nuclear body
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 184 aa Download sequence Send to blast
MAPRDINRSN VVVVAGVSNP THKEIRYRGV RKRPWGRYAA EIRDPGKKTR VWLGTFDTAE 60 EAARAYDTAA REFRGTKAKT NFPTHAAAAR SPSQSSTLDS SSPPPLDLTL AAPLTAAGAL 120 VFPVARPVVF FDAFARAEVR ASFDLPVAGF SDSDSSSVVD YERVPHRKVL DLDLNVPPPP 180 EVA*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	4e-21	26	83	14	72	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.32060	0.0	cotyledon\| hypocotyl\| leaf\| seed coat\| stem

Functional Description ? help Back to Top
Source	Description
UniProt	Acts as a transcriptional repressor. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways, and could also regulate other AtERFs. {ECO:0000269\|PubMed:10715325, ECO:0000269\|PubMed:11487705, ECO:0000269\|PubMed:9756931}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00358	DAP	Transfer from AT3G15210	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.06G236400.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by jasmonate (JA) and by Alternaria brassicicola (locally and systemically), but only slightly by ethylene. Strong induction by wounding, cold or drought stress does not require EIN2, whereas induction by NaCl does. Transcripts accumulate in cycloheximide-treated plants, a protein synthesis inhibitor. Seems to not be influenced by exogenous abscisic acid (ABA), and heat stress. {ECO:0000269\|PubMed:10715325, ECO:0000269\|PubMed:12805630}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC235374	0.0	AC235374.1 Glycine max strain Williams 82 clone GM_WBb0106J23, complete sequence.
GenBank	AC235834	0.0	AC235834.2 Glycine max clone GM_WBb0038B12, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003527229.1	1e-128	ethylene-responsive transcription factor 4
Swissprot	O80340	7e-47	ERF78_ARATH; Ethylene-responsive transcription factor 4
TrEMBL	I1KDR5	1e-127	I1KDR5_SOYBN; Uncharacterized protein
STRING	GLYMA06G35710.1	1e-127	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF330	34	189
Representative plant	OGRP6	16	1718

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G44210.1	9e-27	erf domain protein 9

Link Out ? help Back to Top
Phytozome	Glyma.06G236400.1.p
Entrez Gene	100786709

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Cao WH, et al. Modulation of ethylene responses affects plant salt-stress responses. Plant Physiol., 2007. 143(2): p. 707-19 [PMID:17189334] Lyons R, et al. The RNA-binding protein FPA regulates flg22-triggered defense responses and transcription factor activity by alternative polyadenylation. Sci Rep, 2013. 3: p. 2866 [PMID:24104185] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Gao S, et al. A cotton miRNA is involved in regulation of plant response to salt stress. Sci Rep, 2016. 6: p. 19736 [PMID:26813144] Zhou X, et al. The ERF11 Transcription Factor Promotes Internode Elongation by Activating Gibberellin Biosynthesis and Signaling. Plant Physiol., 2016. 171(4): p. 2760-70 [PMID:27255484] Liu W, et al. The ethylene response factor AtERF4 negatively regulates the iron deficiency response in Arabidopsis thaliana. PLoS ONE, 2017. 12(10): p. e0186580 [PMID:29045490]