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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Glyma.06G235200.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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| Family |
HB-other |
| Protein Properties |
Length: 384aa MW: 42800.3 Da PI: 6.3227 |
| Description |
HB-other family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Glyma.06G235200.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 23.4 | 1e-07 | 13 | 74 | 6 | 55 |
S--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC..........TS-HHHHHHHHHHHHHHH CS
Homeobox 6 tftkeqleeLeelFek..nrypsaeereeLAkkl..........gLterqVkvWFqNrRake 55
+ft+ ++ e+e+ ++ n ps++ + LA+k +++ +qV +WFqN+R+
Glyma.06G235200.1.p 13 RFTQPEVSEMEAILQEhnNAMPSRDVLTALAEKFsesqdrkgkiSVQMKQVWNWFQNKRYAI 74
69999*********9666999*********************99***************865 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 384 aa
Download sequence Send
to blast |
MGRPPSNGGP AFRFTQPEVS EMEAILQEHN NAMPSRDVLT ALAEKFSESQ DRKGKISVQM 60
KQVWNWFQNK RYAIRAKSSK TPGKLNITPM PRDDYNSTPI RSMPQQPTAA SIPAASATVP 120
TAVKATTENS VMEFEAKSGR DGAWYDVATF LSHRYLETSD PEVLVRFAGF GPEEDEWINI 180
RKHVRPRSLP CESSECVVVI PGDLILCFQE GKEQALYFDA HVLDAQRRRH DVRGCRCRFL 240
VRYDHDQSEE IVPLRKICRR PETDYRLQQL HAVNEAAPVD QQKTGMDPAA NVNAVRATTT 300
ETVPKQLIAA NIHMETTPVP VVQTNVPQQP PQSMDMDVDQ KKAETIADVQ AGNSIITPGS 360
VVTNIITTSS VPEVFSQTQN MVE*
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| 3D Structure ? help Back to Top |
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| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 4iuq_A | 5e-46 | 132 | 262 | 4 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
| 4iuq_B | 5e-46 | 132 | 262 | 4 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
| 4iur_A | 5e-46 | 132 | 262 | 4 | 134 | SHH1 SAWADEE |
| 4iur_B | 5e-46 | 132 | 262 | 4 | 134 | SHH1 SAWADEE |
| 4iut_A | 5e-46 | 132 | 262 | 4 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
| 4iut_B | 5e-46 | 132 | 262 | 4 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
| 4iuu_A | 5e-46 | 132 | 262 | 4 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
| 4iuu_B | 5e-46 | 132 | 262 | 4 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
| 4iuv_A | 5e-46 | 132 | 262 | 4 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
| 4iuv_B | 5e-46 | 132 | 262 | 4 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
| Search in ModeBase |
| Functional Description ? help
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| Source |
Description |
| UniProt | May play a role in the recruitment of Pol IV to genomic regions associated with K9 methylated histone H3 that are targets for RdDM. |
| Best hit in Arabidopsis thaliana ? help
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| Hit ID |
E-value |
Description |
| AT3G18380.1 | 1e-128 | sequence-specific DNA binding transcription factors;sequence-specific DNA binding |
