PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.06G216400.6.p
Common NameGLYMA_06G216400, LOC100777809
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB_related
Protein Properties Length: 494aa    MW: 55377.2 Da    PI: 4.6584
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.06G216400.6.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.77.3e-10444492247
                          SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
      Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                          ++W++ E+e l  av ++G g+Wk+I        + Rt+ ++k++w++ 
  Glyma.06G216400.6.p 444 KKWSQLEEETLRTAVDKFGRGNWKLILDSHKdifEERTEVDLKDKWRNM 492
                          58********************************9************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.659438493IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.6E-11439492IPR009057Homeodomain-like
SuperFamilySSF466899.36E-13440492IPR009057Homeodomain-like
PfamPF002493.7E-8444492IPR001005SANT/Myb domain
CDDcd116606.91E-17444493No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0031627Biological Processtelomeric loop formation
GO:0000783Cellular Componentnuclear telomere cap complex
GO:0003691Molecular Functiondouble-stranded telomeric DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 494 aa     Download sequence    Send to blast
MEGGGDVKGW ALEFLLRAQN PVVPSNLIKK VILIVPLSDF YSRLKKTLLL RALQDHLFAV  60
SVPESVLETL EQVEELHRLG DDDDGALVTT SSAMSAAYCA VAVECTLKHL LLELHNNPAY  120
LGAVNRIWRG RVRLMSGSGE GSLLLSPELE RWRTDIEASL LDSSVRERLA SIDTRRDAVF  180
KLRDYLKEAW TDLGPSFLER AALAHINNNA LAANHSEDSQ QPEREIEKCT AAPAEEVHPS  240
TDVEIQKVGE CGSVELQKLA EDSLLDLLEV NEEASMEEQS RDVDVPCPHA INDNEADLME  300
KDQTSAEEVL PSTTVEVQKV RECGSVELQK LAKDSLLNSL EVNEEAHIES RDADVPCPLV  360
ISNNEADLME KDQTSIPHNH DHKPSLMERN SSARIYEWDD SIDGLEDGTS DHATRFNLPS  420
PKGRKVSPLN KYKPANITKR RKVKKWSQLE EETLRTAVDK FGRGNWKLIL DSHKDIFEER  480
TEVDLKDKWR NMT*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.615450.0seed coat
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.06G216400.6.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2353130.0AC235313.1 Glycine max strain Williams 82 clone GM_WBb0072N12, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006582080.10.0uncharacterized protein LOC100777809
RefseqXP_014632138.10.0uncharacterized protein LOC100777809
RefseqXP_028237485.10.0uncharacterized protein LOC114416708
RefseqXP_028237486.10.0uncharacterized protein LOC114416708
TrEMBLA0A445KCS00.0A0A445KCS0_GLYSO; Uncharacterized protein
TrEMBLI1KDB00.0I1KDB0_SOYBN; Uncharacterized protein
STRINGGLYMA06G24730.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58340.21e-11MYB_related family protein