PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.06G209000.2.p | ||||||||
Common Name | GLYMA_06G209000 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | NF-YB | ||||||||
Protein Properties | Length: 114aa MW: 12716.7 Da PI: 4.3598 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 80.5 | 2.2e-25 | 11 | 93 | 3 | 85 |
NF-YB 3 eqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkv 85 ++d+ lP a +++i+k++lP + ++++da++++ ec +efi +v+se+++ c++e+r+ti+++ +l al+ lGf +y+e++ + Glyma.06G209000.2.p 11 KEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNEVCNKEERRTIAPEHVLKALGVLGFGEYIEEVYA 93 6899***************************************************************************9865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 8.5E-34 | 8 | 99 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 2.51E-30 | 12 | 99 | IPR009072 | Histone-fold |
Pfam | PF00808 | 8.5E-23 | 14 | 79 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 114 aa Download sequence Send to blast |
MEPMDIVGKA KEDASLPKAT MTKIIKEMLP PDVRVARDAQ DLLIECCVEF INLVSSESNE 60 VCNKEERRTI APEHVLKALG VLGFGEYIEE VYAAYEQHKL ETMVIVYVND QCA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1jfi_B | 1e-29 | 12 | 91 | 12 | 90 | Transcription Regulator NC2 beta chain |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.4205 | 1e-172 | cotyledon| flower| hypocotyl| leaf| meristem| pod| root| seed coat| stem |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.06G209000.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF464906 | 1e-172 | AF464906.1 Glycine max repressor protein (Dr1) mRNA, complete cds. | |||
GenBank | BT089816 | 1e-172 | BT089816.1 Soybean clone JCVI-FLGm-2L20 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001235678.1 | 4e-71 | class 2 transcription repressor NC2 beta 2 isoform 1 | ||||
Refseq | XP_020205978.1 | 4e-71 | protein Dr1 homolog | ||||
Refseq | XP_020205979.1 | 4e-71 | protein Dr1 homolog | ||||
Refseq | XP_028237421.1 | 4e-71 | protein Dr1 homolog isoform X1 | ||||
Swissprot | P49592 | 4e-67 | NC2B_ARATH; Protein Dr1 homolog | ||||
TrEMBL | A0A0R0JS52 | 4e-77 | A0A0R0JS52_SOYBN; Uncharacterized protein | ||||
STRING | XP_007138352.1 | 1e-69 | (Phaseolus vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G23090.2 | 1e-69 | nuclear factor Y, subunit B13 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.06G209000.2.p |
Publications ? help Back to Top | |||
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