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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.06G206400.1.p | ||||||||
Common Name | GLYMA_06G206400 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | Dof | ||||||||
Protein Properties | Length: 304aa MW: 33256.3 Da PI: 7.964 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 122.8 | 1.2e-38 | 30 | 88 | 4 | 62 |
zf-Dof 4 kalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 lkcprCds ntkfCyynny+lsqPr+fCk+CrryWtkGG lrnvPvGgg+rk+k+s+ Glyma.06G206400.1.p 30 PPLKCPRCDSLNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGVLRNVPVGGGCRKSKRSN 88 6789***************************************************9975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50884 | 29.73 | 32 | 86 | IPR003851 | Zinc finger, Dof-type |
ProDom | PD007478 | 8.0E-25 | 32 | 81 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 4.4E-33 | 32 | 86 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 34 | 70 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 304 aa Download sequence Send to blast |
MHETHSIGGG RFYGGGDRRL RPHHQQQQPP PLKCPRCDSL NTKFCYYNNY NLSQPRHFCK 60 NCRRYWTKGG VLRNVPVGGG CRKSKRSNKP KTTTTTTTSN TNNNRSSFSA TAPATAPTPP 120 APELEHHSHS HSSSESSTLT VTATEEMSAP PPTTSNAPSK NSLLLDNDHR EAKMFANPNP 180 NPSLDSGGIF SEIGNFTSLI NLNNNEAFGV TNQVQAAAGG GHGQWQQQNH QEFGTASFLD 240 HTVPLEFSSL QHKTGHQGGF GSLDWQPGAD QGLFDLPNTV DQPYWTHAHW SDQDNTSSLF 300 HLP* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 8 | 15 | GGRFYGGG |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.17684 | 1e-168 | seed coat |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.06G206400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | DQ857273 | 2e-96 | DQ857273.1 Glycine max Dof22 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028237396.1 | 1e-154 | dof zinc finger protein DOF5.4-like | ||||
TrEMBL | K7KW99 | 0.0 | K7KW99_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA06G22797.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5998 | 30 | 50 |
Representative plant | OGRP38 | 17 | 445 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60850.1 | 7e-32 | OBF binding protein 4 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.06G206400.1.p |