PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.06G205800.1.p
Common NameGLYMA_06G205800
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MIKC_MADS
Protein Properties Length: 245aa    MW: 28152 Da    PI: 9.6027
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.06G205800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF96.98.8e-31959151
                         S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
               SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                         krienk+nrqvtfskRr g+lKKA+E+SvLCdaeva+i+fs++gkl+eyss
  Glyma.06G205800.1.p  9 KRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEYSS 59
                         79***********************************************96 PP
2K-box104.31.6e-34751741100
                K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqee 90 
                          y++++ ++ ++ ++e+++ e+akLk+++e Lq++qR+++G+dLe Ls+keLq+Le+qL+++lk+iRs+Kn++++e+i+el kk k lqe+
  Glyma.06G205800.1.p  75 YAERQLVASDQPQTENWTLEHAKLKARLEVLQKNQRNFMGQDLEGLSIKELQNLEHQLDSALKHIRSRKNQIMHESISELHKKDKVLQEQ 164
                          5667778889999***************************************************************************** PP

                K-box  91 nkaLrkklee 100
                          n++L kk++e
  Glyma.06G205800.1.p 165 NNTLAKKIKE 174
                          *******987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006632.24161IPR002100Transcription factor, MADS-box
SMARTSM004323.7E-40160IPR002100Transcription factor, MADS-box
CDDcd002656.70E-43279No hitNo description
SuperFamilySSF554558.89E-35293IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-31323IPR002100Transcription factor, MADS-box
PfamPF003192.5E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-312338IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-313859IPR002100Transcription factor, MADS-box
PfamPF014866.2E-2983172IPR002487Transcription factor, K-box
PROSITE profilePS5129716.85388178IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MGRGRVQLKR IENKINRQVT FSKRRSGLLK KAHEISVLCD AEVALIVFST KGKLFEYSSD  60
PCMERILERY ERYSYAERQL VASDQPQTEN WTLEHAKLKA RLEVLQKNQR NFMGQDLEGL  120
SIKELQNLEH QLDSALKHIR SRKNQIMHES ISELHKKDKV LQEQNNTLAK KIKEKEKALA  180
QHAQMEQRGD EMDLTSSALV PHPLETSNIR ESSQIRGEGD NEGTPTPTRA NAILPSWMLR  240
PSNE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P1e-22174173Myocyte-specific enhancer factor 2B
1tqe_Q1e-22174173Myocyte-specific enhancer factor 2B
1tqe_R1e-22174173Myocyte-specific enhancer factor 2B
1tqe_S1e-22174173Myocyte-specific enhancer factor 2B
6bz1_A1e-22174173MEF2 CHIMERA
6bz1_B1e-22174173MEF2 CHIMERA
6bz1_C1e-22174173MEF2 CHIMERA
6bz1_D1e-22174173MEF2 CHIMERA
6c9l_A1e-22174173Myocyte-specific enhancer factor 2B
6c9l_B1e-22174173Myocyte-specific enhancer factor 2B
6c9l_C1e-22174173Myocyte-specific enhancer factor 2B
6c9l_D1e-22174173Myocyte-specific enhancer factor 2B
6c9l_E1e-22174173Myocyte-specific enhancer factor 2B
6c9l_F1e-22174173Myocyte-specific enhancer factor 2B
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.18820.0pod
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed during the early stages of tuberization. {ECO:0000269|PubMed:8756601}.
UniprotTISSUE SPECIFICITY: Abundant in vegetative organs. {ECO:0000269|PubMed:8543185}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Function -- GeneRIF ? help Back to Top
  1. Data indicate that photoperiod regulates expression of FRUITFULL homolog GmFULa (KF831241).
    [PMID: 25326369]
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.06G205800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU2874560.0EU287456.1 Glycine max MADS box protein AP1a (AP1a) mRNA, complete cds.
GenBankKF8312410.0KF831241.1 Glycine max FULa mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001242674.20.0agamous-like MADS-box protein AGL8 homolog
RefseqXP_028237391.10.0truncated transcription factor CAULIFLOWER A-like
SwissprotQ424291e-114AGL8_SOLTU; Agamous-like MADS-box protein AGL8 homolog
TrEMBLA0A0B2QII81e-180A0A0B2QII8_GLYSO; Agamous-like MADS-box protein AGL8-like
TrEMBLK7KW881e-180K7KW88_SOYBN; Uncharacterized protein
STRINGGLYMA06G22650.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58832119
Representative plantOGRP1617761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60910.11e-108AGAMOUS-like 8
Publications ? help Back to Top
  1. Jia Z, et al.
    GmFULa, a FRUITFULL homolog, functions in the flowering and maturation of soybean.
    Plant Cell Rep., 2015. 34(1): p. 121-32
    [PMID:25326369]
  2. Kang SG,Hannapel DJ
    Nucleotide sequences of novel potato (Solanum tuberosum L.) MADS-box cDNAs and their expression in vegetative organs.
    Gene, 1995. 166(2): p. 329-30
    [PMID:8543185]