PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.06G197700.1.p
Common NameGLYMA_06G197700
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C2H2
Protein Properties Length: 284aa    MW: 31810.5 Da    PI: 10.2348
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.06G197700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.98.7e-06170190222
                          EETTTTEEESSHHHHHHHHHH CS
              zf-C2H2   2 kCpdCgksFsrksnLkrHirt 22 
                           C++C  s+s++snLk+H+r 
  Glyma.06G197700.1.p 170 YCKICQISCSSPSNLKQHLRG 190
                          5******************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.77E-10165198No hitNo description
SMARTSM004513.3E-7166200IPR003604Zinc finger, U1-type
SMARTSM003550.06169193IPR015880Zinc finger, C2H2-like
PfamPF128744.9E-10170193No hitNo description
PROSITE patternPS000280171193IPR007087Zinc finger, C2H2
SMARTSM004510.065204238IPR003604Zinc finger, U1-type
SuperFamilySSF576675.64E-7205239No hitNo description
SMARTSM00355140207231IPR015880Zinc finger, C2H2-like
PfamPF128741.0E-5208231No hitNo description
PROSITE patternPS000280209231IPR007087Zinc finger, C2H2
SuperFamilySSF576671.31E-7242280No hitNo description
SMARTSM004510.063249281IPR003604Zinc finger, U1-type
SMARTSM00355130252276IPR015880Zinc finger, C2H2-like
PfamPF128747.3E-6253276No hitNo description
PROSITE patternPS000280254276IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MKFSSLSGTK RKESPTRSTH HPRLKHQQPF HGSLNHEVQT GACDVKPSND ASLPKPLPGP  60
SSIKFPSLSG TKRKESPTRS TDYLCLQHQQ PFHGSRNHEM KTGARDFSLN VKSSNDASLP  120
KSLPGPCTSK FSSLLGTKGK ESPSSDHLRL QHHHPFHGTL NHEGELDDIY CKICQISCSS  180
PSNLKQHLRG RKHKQMLQKG GSNSQMQWCE VCCIPCMNED LLKMHFQGQK HKAKLQMLEI  240
SKQGVEAPNK PKWCALCKLW CSDEFAFRLH LGGKKHVKKK RCP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.06G197700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006581982.20.0uncharacterized protein LOC102666094 isoform X2
TrEMBLK7KW120.0K7KW12_SOYBN; Uncharacterized protein
STRINGGLYMA06G21315.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1811722