PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

NAC

Protein Properties

Length: 358aa MW: 40199.4 Da PI: 8.9706

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.06G195500.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	183.1	6.9e-57	18	143	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 lppGfrFhPtdeel+++yL +kv+++++++ ++i evd++++ePwdLp k+k +ekewyfF+ rd+ky+tg r+nrat+sgyWkatgkdk Glyma.06G195500.1.p 18 LPPGFRFHPTDEELISHYLYRKVTDTNFSA-RAIGEVDLNRSEPWDLPWKAKMGEKEWYFFCVRDRKYPTGLRTNRATESGYWKATGKDK 106 79************************99.89***********888999******************************** PP NAM 91 evlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 e+++ +++lvg+kktLvfykgrapkgektdWvmheyrl Glyma.06G195500.1.p 107 EIFR-GKSLVGMKKTLVFYKGRAPKGEKTDWVMHEYRL 143 .999**************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.88E-65	12	168	IPR003441	NAC domain
PROSITE profile	PS51005	60.215	18	168	IPR003441	NAC domain
Pfam	PF02365	6.4E-30	19	143	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 358 aa Download sequence Send to blast
MENVSVLLCN KEKDQMDLPP GFRFHPTDEE LISHYLYRKV TDTNFSARAI GEVDLNRSEP 60 WDLPWKAKMG EKEWYFFCVR DRKYPTGLRT NRATESGYWK ATGKDKEIFR GKSLVGMKKT 120 LVFYKGRAPK GEKTDWVMHE YRLDGKFSVH NLPKTAKNEW VICRVFQKSS GVKRTHISGM 180 MMLDSYGNEM VYSSSALPPL TDSSPSIGNN TKALSVTDSA YVPCFSNPID VPRGIFDSLN 240 NINISINSNT LYGVSSNHSF YNTQGVQLQA PPTLPLPSSS NHYLRAFLEN QGNGSNMSNN 300 GFEPEREMVS VSQKTSLSTD VKAEISSLGK RHFENQNNPI ASAAAVAPMD LATLWNY*

Sequence ? help Back to Top

Protein Sequence Length: 358 aa Download sequence Send to blast

MENVSVLLCN KEKDQMDLPP GFRFHPTDEE LISHYLYRKV TDTNFSARAI GEVDLNRSEP  60
WDLPWKAKMG EKEWYFFCVR DRKYPTGLRT NRATESGYWK ATGKDKEIFR GKSLVGMKKT  120
LVFYKGRAPK GEKTDWVMHE YRLDGKFSVH NLPKTAKNEW VICRVFQKSS GVKRTHISGM  180
MMLDSYGNEM VYSSSALPPL TDSSPSIGNN TKALSVTDSA YVPCFSNPID VPRGIFDSLN  240
NINISINSNT LYGVSSNHSF YNTQGVQLQA PPTLPLPSSS NHYLRAFLEN QGNGSNMSNN  300
GFEPEREMVS VSQKTSLSTD VKAEISSLGK RHFENQNNPI ASAAAVAPMD LATLWNY*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-55	15	174	14	171	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-55	15	174	14	171	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-55	15	174	14	171	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-55	15	174	14	171	NO APICAL MERISTEM PROTEIN
3swm_A	1e-55	15	174	17	174	NAC domain-containing protein 19
3swm_B	1e-55	15	174	17	174	NAC domain-containing protein 19
3swm_C	1e-55	15	174	17	174	NAC domain-containing protein 19
3swm_D	1e-55	15	174	17	174	NAC domain-containing protein 19
3swp_A	1e-55	15	174	17	174	NAC domain-containing protein 19
3swp_B	1e-55	15	174	17	174	NAC domain-containing protein 19
3swp_C	1e-55	15	174	17	174	NAC domain-containing protein 19
3swp_D	1e-55	15	174	17	174	NAC domain-containing protein 19
4dul_A	1e-55	15	174	14	171	NAC domain-containing protein 19
4dul_B	1e-55	15	174	14	171	NAC domain-containing protein 19
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.26858	0.0	seed coat

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.06G195500.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by the microRNA miR164. {ECO:0000269\|PubMed:15294871, ECO:0000269\|PubMed:17098808}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	DQ028773	0.0	DQ028773.1 Glycine max NAC domain protein NAC5 (NAC5) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001235899.2	0.0	NAC domain protein NAC5
Refseq	XP_028237267.1	0.0	NAC domain-containing protein 100-like
Swissprot	Q9FLJ2	1e-138	NC100_ARATH; NAC domain-containing protein 100
TrEMBL	A0A0B2QXJ6	0.0	A0A0B2QXJ6_GLYSO; NAC domain-containing protein 100
TrEMBL	A0A0R0JV75	0.0	A0A0R0JV75_SOYBN; Uncharacterized protein
STRING	GLYMA06G21020.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF409	34	171
Representative plant	OGRP17	15	800

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G61430.1	1e-136	NAC domain containing protein 100

Link Out ? help Back to Top
Phytozome	Glyma.06G195500.1.p

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]