PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

MYB

Protein Properties

Length: 334aa MW: 37704.1 Da PI: 6.1067

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.06G193600.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	54.5	2.6e-17	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd +lv +++++G+g+W+++++ g+ R+ k+c++rw +yl Glyma.06G193600.1.p 14 KGPWTPEEDIILVSYIQEHGPGNWRSVPSNTGLMRCSKSCRLRWTNYL 61 79********************************************97 PP
2	Myb_DNA-binding	48.4	2.2e-15	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T E++ ++++ ++lG++ W++Ia++++ Rt++++k++w+++l Glyma.06G193600.1.p 67 RGNFTDHEEKMIIHLQALLGNR-WAAIASYLP-QRTDNDIKNYWNTHL 112 89******************.*****.**********996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.6E-24	5	64	IPR009057	Homeodomain-like
PROSITE profile	PS51294	25.066	9	65	IPR017930	Myb domain
SuperFamily	SSF46689	2.17E-30	11	108	IPR009057	Homeodomain-like
SMART	SM00717	8.9E-14	13	63	IPR001005	SANT/Myb domain
Pfam	PF00249	4.6E-16	14	61	IPR001005	SANT/Myb domain
CDD	cd00167	8.84E-11	16	61	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.2E-24	65	117	IPR009057	Homeodomain-like
PROSITE profile	PS51294	19.216	66	116	IPR017930	Myb domain
SMART	SM00717	4.0E-15	66	114	IPR001005	SANT/Myb domain
Pfam	PF00249	8.6E-14	67	112	IPR001005	SANT/Myb domain
CDD	cd00167	5.97E-10	69	112	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 334 aa Download sequence Send to blast
MGRPPCCDKI GIKKGPWTPE EDIILVSYIQ EHGPGNWRSV PSNTGLMRCS KSCRLRWTNY 60 LRPGIKRGNF TDHEEKMIIH LQALLGNRWA AIASYLPQRT DNDIKNYWNT HLKKKLKKMQ 120 IGGGSDDDNN DDKSNSSNNS QIKGQWERRL QTDIHMAKQA LCEALSLDKP TQIFPETKLP 180 STSSHHHPTT TTTPNQTTSL YASSTENIAR LLENWMKKSP NMTTTTTTTM ETKPFSNNNM 240 VITTGSSSSE GTQSTITCTQ EYALDSLWSF NSERSSQSEE NTNLGESKPQ YQEPQETQVP 300 LMLLENWLFD DAAPQCNEDL MNMSLEESTE GLF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1gv2_A	2e-25	14	116	4	105	MYB PROTO-ONCOGENE PROTEIN
1h8a_C	2e-25	12	116	25	128	MYB TRANSFORMING PROTEIN
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.28582	0.0	stem

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Expression in flowers increases as the flowers develop. {ECO:0000269\|PubMed:1840903}.
Uniprot	TISSUE SPECIFICITY: Expressed in flowers, leaves and weakly in seed pods. {ECO:0000269\|PubMed:1840903}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. {ECO:0000305}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.06G193600.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KU664645	0.0	KU664645.1 Glycine max cultivar Williams 82 transcription factor MYBJ3 (MYBJ3) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003527079.1	0.0	myb-related protein 306
Swissprot	P81392	1e-118	MYB06_ANTMA; Myb-related protein 306
TrEMBL	K7KVY8	0.0	K7KVY8_SOYBN; Transcription factor MYBJ3
STRING	GLYMA06G20800.3	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1016	34	115
Representative plant	OGRP5	17	1784

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47600.1	1e-106	myb domain protein 94

Link Out ? help Back to Top
Phytozome	Glyma.06G193600.1.p
Entrez Gene	100794319

Publications ? help Back to Top
Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C Expression patterns of myb genes from Antirrhinum flowers. Plant Cell, 1991. 3(2): p. 115-25 [PMID:1840903]