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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.06G188100.1.p | ||||||||
Common Name | GLYMA_06G188100, LOC100777819 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | bHLH | ||||||||
Protein Properties | Length: 270aa MW: 28911.2 Da PI: 6.5131 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 33.3 | 8.9e-11 | 149 | 196 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++YI+sLq Glyma.06G188100.1.p 149 SHSLAERARREKISERMKILQDLVPGC----NKVIGKALVLDEIINYIQSLQ 196 8*************************9....677*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 3.93E-18 | 143 | 215 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 8.14E-11 | 143 | 200 | No hit | No description |
PROSITE profile | PS50888 | 15.828 | 145 | 195 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.1E-18 | 145 | 216 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.8E-8 | 149 | 196 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.0E-10 | 151 | 201 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 270 aa Download sequence Send to blast |
MDPPLITDST FSPAYSLAEI WPGMPHFPPP FPHPSSADHS TLTDLTATPR KRKDCSSSSS 60 SASAADEDDC SKVLSSTTTA TANLSNNDSG SNKQMKLGGS SVENDGFKAE AEASSAGGNK 120 SSEQSNKPCE APKQDYIHVR ARRGQATDSH SLAERARREK ISERMKILQD LVPGCNKVIG 180 KALVLDEIIN YIQSLQRQVE FLSMKLEAVN SRMNMNPTID GFPSKDVGTQ PFDIAGMVFG 240 SQAARGYAQG SSPPGWLHMQ IGGGFERTT* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.22601 | 0.0 | hypocotyl| stem |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that may regulate jasmonate-regulated genes. {ECO:0000250|UniProtKB:Q69WS3}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.06G188100.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT090847 | 0.0 | BT090847.1 Soybean clone JCVI-FLGm-5B17 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003527048.1 | 0.0 | transcription factor bHLH79 | ||||
Swissprot | Q84T08 | 5e-79 | BH089_ORYSJ; Transcription factor BHLH089 | ||||
TrEMBL | I1KCM5 | 0.0 | I1KCM5_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA06G20000.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1171 | 34 | 105 |
Representative plant | OGRP58 | 16 | 313 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G59640.1 | 2e-74 | BIG PETAL P |
Link Out ? help Back to Top | |
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Phytozome | Glyma.06G188100.1.p |
Entrez Gene | 100777819 |
Publications ? help Back to Top | |||
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