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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.06G186800.1.p | ||||||||
Common Name | GLYMA_06G186800 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | E2F/DP | ||||||||
Protein Properties | Length: 353aa MW: 39836.7 Da PI: 9.5989 | ||||||||
Description | E2F/DP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | E2F_TDP | 76.2 | 3.3e-24 | 12 | 77 | 1 | 71 |
E2F_TDP 1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 rk+ksL+ll+++fl+l++k+ + v l+++a++L v +rRRiYDi+NVLe+++++++k+kn+++wkg Glyma.06G186800.1.p 12 RKQKSLGLLCTNFLSLYNKEGVRLVGLDDAASRL---GV--ERRRIYDIVNVLESVGVLTRKAKNQYTWKG 77 79*****************999************...**..****************************98 PP | |||||||
2 | E2F_TDP | 77.1 | 1.8e-24 | 148 | 224 | 1 | 71 |
E2F_TDP 1 rkeksLrlltqkflkllekseegivtlnevakeLvse.dvknkrRRiYDilNVLealnliek.....kekneirwkg 71 r+eksL lltq+f+kl+ +s+ ++++l+e+ak L+ + + ++k+RR+YDi+NVL+++nliek ++k+++rw g Glyma.06G186800.1.p 148 RREKSLALLTQNFVKLFVCSNFEMISLDEAAKLLLGNaNNRTKVRRLYDIANVLSSMNLIEKthttnTRKPAFRWLG 224 689*******************************9999999************************999*******87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 2.3E-26 | 8 | 78 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF46785 | 2.58E-16 | 11 | 75 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM01372 | 1.6E-27 | 12 | 77 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
Pfam | PF02319 | 3.9E-20 | 13 | 77 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
Gene3D | G3DSA:1.10.10.10 | 1.1E-23 | 144 | 225 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM01372 | 4.8E-28 | 148 | 224 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
Pfam | PF02319 | 2.2E-20 | 150 | 224 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
SuperFamily | SSF46785 | 8.62E-13 | 150 | 225 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005667 | Cellular Component | transcription factor complex | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 353 aa Download sequence Send to blast |
MTSLSTHHTY SRKQKSLGLL CTNFLSLYNK EGVRLVGLDD AASRLGVERR RIYDIVNVLE 60 SVGVLTRKAK NQYTWKGFCA IPAALQELKD EGLKENPGSF DDSNDNAKVS DDEEEEEETF 120 PNINIGSQSE KENPDYTATV KSSKNENRRE KSLALLTQNF VKLFVCSNFE MISLDEAAKL 180 LLGNANNRTK VRRLYDIANV LSSMNLIEKT HTTNTRKPAF RWLGVRGKTW GGSVDLAQNS 240 NVKESRKRMF GTDIGNISFK RNKVDLSMDG QNSKMQNQHE NISPRAQLEK IIIKKDAKQT 300 SESYQFGPFA PAYVPKVGTS ENNSVKKVHD WDSLAQEHRP QYQNQGFHSY KG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4yo2_A | 8e-37 | 11 | 216 | 3 | 228 | Transcription factor E2F8 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.1509 | 0.0 | cotyledon| flower| hypocotyl| root| stem| vegetative bud |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed in a cell cycle-dependent manner. Not detected during early S phase. Expressed at both the G1/S and S/G2 transitions, with a peak during G2. {ECO:0000269|PubMed:11786543, ECO:0000269|PubMed:18787127}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed exclusively in mitotically dividing cells. Highly expressed in young leaves and mature flowers. Lower expression in young stalk and in young and mature flowers. {ECO:0000269|PubMed:11867638, ECO:0000269|PubMed:15649366}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Inhibitor of E2F-dependent activation of gene expression. Binds specifically the E2 recognition site without interacting with DP proteins and prevents transcription activation by E2F/DP heterodimers. Controls the timing of endocycle onset and inhibits endoreduplication. {ECO:0000269|PubMed:11786543, ECO:0000269|PubMed:11867638, ECO:0000269|PubMed:15649366, ECO:0000269|PubMed:18787127}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.06G186800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006581939.1 | 0.0 | E2F transcription factor-like E2FE isoform X3 | ||||
Refseq | XP_006581940.1 | 0.0 | E2F transcription factor-like E2FE isoform X4 | ||||
Refseq | XP_028237162.1 | 0.0 | E2F transcription factor-like E2FE isoform X3 | ||||
Refseq | XP_028237163.1 | 0.0 | E2F transcription factor-like E2FE isoform X4 | ||||
Swissprot | Q8LSZ4 | 1e-111 | E2FE_ARATH; E2F transcription factor-like E2FE | ||||
TrEMBL | A0A0R0JIY7 | 0.0 | A0A0R0JIY7_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA06G19843.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3668 | 33 | 66 | Representative plant | OGRP2474 | 16 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G48160.1 | 1e-114 | DP-E2F-like 1 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.06G186800.1.p |
Publications ? help Back to Top | |||
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